BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZC08FM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1024 1199 0.0
>3x_Contig1024
Length = 3867
Score = 1199 bits (605), Expect = 0.0
Identities = 675/696 (96%), Gaps = 2/696 (0%)
Strand = Plus / Minus
Query: 87 ccagatggttcaaaaagggttaattcccctgcatgtttgttattgccaatctgatcaacc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2417 ccagatggttcaaaaagggttaattcccctgcatgtttgttattgccaatctgatcaacc 2358
Query: 147 ttggactctgcaaaacagcttttctttacattaacccttgtaatattatttaattaatgg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2357 ttggactctgcaaaacagcttttctttacattaacccttgtaatattatttaattaatgg 2298
Query: 207 attgatacgcgttcatgttcaattgatgtccaaactcttgagtatgtttaacgttgattc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2297 attgatacgcgttcatgttcaattgatgtccaaactcttgagtatgtttaacgttgattc 2238
Query: 267 ttcatcaatggtttgatactttgagcccactccattgtacttccttaagccattggataa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2237 ttcatcaatggtttgatactttgagcccactccattgtacttccttaagccattggataa 2178
Query: 327 acttccatcaaaattgaccgcgtctttatcgtattggttaacaggatgcgtagcacttaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2177 acttccatcaaaattgaccgcgtctttatcgtattggttaacaggatgcgtagcacttaa 2118
Query: 387 gcgcgattgtgtatcaaaagactgtccattccaatattgttggttcaataacgaagacaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2117 gcgcgattgtgtatcaaaagactgtccattccaatattgttggttcaataacgaagacaa 2058
Query: 447 gtccgtgtttggaataaaagatntttcaacgacgttttggccaccgaatgagaccaaact 506
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2057 gtccgtgtttggaataaaagatttttcaacgacgttttggccaccgaatgagaccaaact 1998
Query: 507 ttgagtgtcaaagtctctctgaccagcatattgtgtataactactgttgttggatggagc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1997 ttgagtgtcaaagtctctctgaccagcatattgtgtataactactgttgttggatggggc 1938
Query: 567 tttcctgggtgccctagaaagtttcgtcaattggactgtgcagagttgtatattattcaa 626
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct: 1937 tttcctgggtgccctagaaggtttcgtcaattggactgtgcagagttgtaaattatccaa 1878
Query: 627 aaaccctttcatcagacaaccccttttctctgaaatgaagtagtagatgactccataagc 686
|||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1877 aaacccttcaacaagacaa-cccttttctctgaaatgaagtagtagatgactccataagc 1819
Query: 687 tattgcgagatattgcccctgggttacccaattttattagacc-tttttatcccgattca 745
|||||||||||| ||||| ||||||||||||| |||||||||| | |||| | ||| |||
Sbjct: 1818 tattgcgagatagtgcccttgggttacccaatattattagaccgtatttagcacgagtca 1759
Query: 746 acgcaacatttaaacaacctgggtcactcaagaaac 781
|||||||||||| || || |||||||||||||||||
Sbjct: 1758 acgcaacatttagacgacgtgggtcactcaagaaac 1723
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7145
Number of Sequences: 1807
Number of extensions: 7145
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)