BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZC08RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1610 1249 0.0
>3x_Contig1610
Length = 13981
Score = 1249 bits (630), Expect = 0.0
Identities = 734/761 (96%), Gaps = 6/761 (0%)
Strand = Plus / Plus
Query: 48 tacacatggtactaaacgaaggatttgtgaaagacaagtgttagttcaatacgtcagata 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2456 tacacatggtactaaacga-ggatttgtgaaagacaagtgttagttcaatacgtcagata 2514
Query: 108 tcgacactcactcaaaacacaatggtttctcaattattcgaagaaaaggtatgtggaatc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2515 tcgacactcactcaaaacacaatggtttctcaattattcgaagaaaaggtatgtggaatc 2574
Query: 168 gttgttgcaatggcttttgatttcccttaataatcatactaaccgcatcttacatttatc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2575 gttgttgcaatggcttttgatttcccttaataatcatactaaccgcatcttacatttatc 2634
Query: 228 tgcaggctaaagctgtcaatgaattgccatcaactccaaataacgatgaattgttgaaat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2635 tgcaggctaaagctgtcaatgaattgccatcaactccaaataacgatgaattgttgaaat 2694
Query: 288 tgtatgctctatacaagcaagcaaccgtcggtgacaacaccaaggaaaaaccaggcatgt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2695 tgtatgctctatacaagcaagcaaccgtcggtgacaacaccaaggaaaaaccaggcatgt 2754
Query: 348 tcaacttgaaggaccgttacaagtgggacgcctgggaattgttgaagggcacttcccaag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2755 tcaacttgaaggaccgttacaagtgggacgcctgggaattgttgaagggcacttcccaag 2814
Query: 408 aagatgccgaacaacagtacatcgaattggttgaccaattgatcaagaaatacgccccat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2815 aagatgccgaacaacagtacatcgaattggttgaccaattgatcaagaaatacgccccat 2874
Query: 468 agagctggatggtctcgcaagttattgcatcatctaactaactatctatatctacatata 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2875 agagctggatggtctcgcaagttattgcatcatctaactaactatctatatctacatata 2934
Query: 528 tattatccttgatccatatagctaatgataatacccttattacttcgtttgaaacacgat 587
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2935 tattatccttgatccatatagctaatgataatacccttattactcggtttgaaacacgaa 2994
Query: 588 ttacaagtcacgtgaacaagctaacgccaactatttacccngctatttgcagttgagtgg 647
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2995 ttacaagtcacgtgaacaagctaacgccaactatttacccggctatttgcagttgagtgg 3054
Query: 648 caaaaaattc-ttctttcctagcagtatataagttacccttccgtt-aaca-gagcacga 704
|||||||||| ||||| |||||||||||||||||||||| |||||| |||| ||||||||
Sbjct: 3055 caaaaaattctttcttccctagcagtatataagttaccc-tccgttaaacaggagcacga 3113
Query: 705 tccctatttttcctttaattaatggggttcattcattgttttttagccattttattcggg 764
|||||||||||| || ||| ||||||||||| ||||||||| ||| || | ||| ||||
Sbjct: 3114 tccctatttttctcttcatttatggggttcatacattgttttctaggcaatatatccggg 3173
Query: 765 ttacaaactttttttactttccttctgaatcccctccaaat 805
| ||| || | ||||||||||| ||||| ||| ||||||||
Sbjct: 3174 taacagac-tcttttactttccatctgattccactccaaat 3213
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8314
Number of Sequences: 1807
Number of extensions: 8314
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)