BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZC09FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1404 1253 0.0
>3x_Contig1404
Length = 8096
Score = 1253 bits (632), Expect = 0.0
Identities = 658/667 (98%)
Strand = Plus / Plus
Query: 86 cttacttctggtcttctcctttttctgcttttcatgtaaaatttcaatgtgttgttcaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5481 cttacttctggtcttctcctttttctgcttttcatgtaaaatttcaatgtgttgttcaag 5540
Query: 146 tgaggcaacttttgcgatttgcatcttgagctcaattcctcctttctgcatgattctatc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5541 tgaggcaacttttgcgatttgcatcttgagctcaattcctcctttctgcatgattctatc 5600
Query: 206 cttgagatcatcaatcttatcttggctaaactttgaagcatcaattgtttgctgcaaatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5601 cttgagatcatcaatcttatcttggctaaactttgaagcatcaattgtttgctgcaaatg 5660
Query: 266 ttgtctcaaaatatctagtttcttctcttcatccaacagtggctgttgattcttctcgtt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5661 ttgtctcaaaatatctagtttcttctcttcatccaacagtggctgttgattcttctcgtt 5720
Query: 326 catagaaagttccctagcaagctgtgatagtcgttggtgataggattccacctcatcgac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5721 catagaaagttccctagcaagctgtgatagtcgttggtgataggattccacctcagcgac 5780
Query: 386 ccgagatcctttctcaagttgtattttggaaatctgaatatcaatctccggaagacgatc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5781 ccgagatcctttctcaagttgtattttggaaatctgaatatcaatctccggaagacgatc 5840
Query: 446 tgttaacttttgtaatgcagattccatctcatggaccatcgatagagctgacctataatt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5841 tgttaacttttgtaatgcagattccatctcatggaccatcgatagagctgacctataatt 5900
Query: 506 agtttctttggttgaaagttgtacttccattttctccacttcatcgcgagaatattgact 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5901 agtttctttggttgaaagttgtacttccattttctccacttcatcgcgagaatattgact 5960
Query: 566 tgccgtagtagcttttgatctcattaagccactttgaggagaatgaccccctcctgacat 625
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 5961 tgccgtagtagcttttgatctcattaagccactttggggagaagaaccccctcctgacat 6020
Query: 626 tgtaccgnaaatatcgattaatttcccattcaacgtgaccactctgaaccttctttttcc 685
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 6021 tgtaccggaaatatcgattaatttcccatccaacgtgaccactctgaaccttcttttccc 6080
Query: 686 gtaagctactcgattagcttgctgtaaatccctggcaactaacgtatctctgagaactga 745
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6081 gtaggctactcgattagcttgctgtaaatccctggcaactaacgtatctctgagaactga 6140
Query: 746 ttagaat 752
||||||
Sbjct: 6141 gtagaat 6147
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6891
Number of Sequences: 1807
Number of extensions: 6891
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)