BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZC09RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1604 1239 0.0
>3x_Contig1604
Length = 15703
Score = 1239 bits (625), Expect = 0.0
Identities = 739/769 (96%), Gaps = 6/769 (0%)
Strand = Plus / Plus
Query: 49 aggttaaggatgtgaatgaggatgatctatatgatacccactggctgcttggatctgtgg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11132 aggttaaggatgtgaatgaggatgatctatatgatacccactggctgcttggatctgtgg 11191
Query: 109 aacatggagaattgttatcttcagacactccatctattcctaaggaatggagtgacaaaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11192 aacatggagaattgttatcttcagacactccatctattcctaaggaatggagtgacaaaa 11251
Query: 169 ttagtgaaatcttgcaaacaaaatcctcatcatatcaagatatgtcaaatacctggacac 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11252 ttagtgaaatcttgcaaacaaaatcctcatcatatcaagatatgtcaaatacctggacac 11311
Query: 229 ttgaattaaagtcatgtccacacatacagactttcgacttatcgaacttggagaagcgag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11312 ttgaattaaagtcatgtccacacatacagactttcgacttatcgaacttggagaagcgag 11371
Query: 289 aaggtggcatttctcaaagctgtaacgactgtggtcttacttctaacctttggttatgtc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11372 aaggtggcatttctcaaagctgtaacgactgtggtcttacttctaacctttggttatgtc 11431
Query: 349 tccattgtggaaacgtcgcctgtggaagatagcaggttgggatagaggggtactctcatg 408
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 11432 tccattgtggaaacgtcgcctgtggaagagagcaggttgggatagaggggtactctcatg 11491
Query: 409 ctttgaaacattatgaaagcacagatggccacgctttatcgataaaattgggctctttga 468
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 11492 ctttgaaacattatgaaagcacagatggccacgctttagcgataaaattgggctctttga 11551
Query: 469 cagctgatgcagctgatatatactgttattcttgtgatgaagatgtgaaattcacccata 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11552 cagctgatgcagctgatatatactgttattcttgtgatgaagatgtgaaattcacccata 11611
Query: 529 atctgcagttgcaggatatcttgaagttttgggaagtcgaaataccagccaagtccaaag 588
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 11612 atctgcagttgcaggatatcttgaagttttgggaagtcgaagtaccagccaagtccaaag 11671
Query: 589 ataagacattggtggaatttgcagtggaacaaagtctgaaatgggattttcaaatggtag 648
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 11672 aaaagacattggtggaattgcaagtggaacaaagtctgaaatgggattttcaaatggtag 11731
Query: 649 atccacaa-gtaaaagtttaaaacatctacaaaa-ggtcctgaatacagtttgggcctat 706
|| ||||| ||||||||||||||||||||||||| |||||||||||| |||||||| |||
Sbjct: 11732 attcacaaggtaaaagtttaaaacatctacaaaatggtcctgaatacggtttgggcttat 11791
Query: 707 taattttgggcatttcttgctacctaattcctg-gttggcagttttacttttacgggggg 765
||| |||||||| |||||||||||||| | ||| ||| |||||||| || |||| |||
Sbjct: 11792 taaatttgggcaattcttgctacctaaattctgtattgcaagttttac-ttaacggtggg 11850
Query: 766 atcagaaattgggaccctaaatgggttaagatccctttcctaaagatgt 814
|||||||||| ||| |||| |||| ||| ||| ||||||||| ||||||
Sbjct: 11851 atcagaaatt-ggaacctagatggattaggat-cctttcctacagatgt 11897
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6248
Number of Sequences: 1807
Number of extensions: 6248
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)