BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC37ZC10FM1.SCF screened BAC_end
         (903 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1078                                                        1402   0.0  

>3x_Contig1078 
          Length = 3134

 Score = 1402 bits (707), Expect = 0.0
 Identities = 798/818 (97%), Gaps = 8/818 (0%)
 Strand = Plus / Plus

                                                                        
Query: 89   aaagagacttgggcagtcatcacgttcaaaaacctaatgaattggatgttacttccaatc 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724  aaagagacttgggcagtcatcacgttcaaaaacctaatgaattggatgttacttccaatc 783

                                                                        
Query: 149  ctactggtgatatctcaaagatgtcagaatccaaacgtttaaaacaaaacgctcaaccag 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784  ctactggtgatatctcaaagatgtcagaatccaaacgtttaaaacaaaacgctcaaccag 843

                                                                        
Query: 209  atacaaaaccatacagacttatcgtgctagtgagcatgccatatgatgggaaacgaacga 268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844  atacaaaaccatacagacttatcgtgctagtgagcatgccatatgatgggaaacgaacga 903

                                                                        
Query: 269  aattcttcactttggtagattcaaagactcttgataaattttggaaggattatgttaatg 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904  aattcttcactttggtagattcaaagactcttgataaattttggaaggattatgttaatg 963

                                                                        
Query: 329  ttgtaaaaacaagtatgtctggattaattaaaaagaagaagaagaagaagggtggtaaga 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964  ttgtaaaaacaagtatgtctggattaattaaaaagaagaagaagaagaagggtggtaaga 1023

                                                                        
Query: 389  aaaactgatgaaatattcccaacctattatcacccatgaatcataaatccgcaatcgtgt 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 aaaactgatgaaatattcccaacctattatcacccatgaatcataaatccgcaatcgtgt 1083

                                                                        
Query: 449  agcattataaagtacatgttatatatacatatatagatgtcaaactgcaaaccagtaatt 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 agcattataaagtacatgttatatatacatatatagatgtcaaactgcaaaccagtaatt 1143

                                                                        
Query: 509  tggttttcattcgaactccacgacaattgttcccgatggataaattgtccgttcttcctt 568
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 tggttttcattcgaactccacgacaattgttcccgatggataaattgtccgttcttcctt 1203

                                                                        
Query: 569  gatcactgtggttggctccaaacgggttctgggcacaggtgaatatagttgaaagtcata 628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 gatcactgtggttggctccaaacgggttctgggcacaggtgaatatagttgaaagtcata 1263

                                                                        
Query: 629  ctgatactcgtaatttggtttttcttgtgtaatatcattctcgctgctagtgtcagataa 688
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 ctgatactcgtaatttggtttttcttgtgtaatatcattctcgctgctagtgtcagataa 1323

                                                                        
Query: 689  t-aacctgctctgtataaatgc-acgtatgcgtaaaatct-ctcaattgtt-atgaagca 744
            | |||||||||||||| ||||| |||||||||| |||||| |||||||||| ||||||||
Sbjct: 1324 taaacctgctctgtat-aatgcaacgtatgcgt-aaatctcctcaattgttaatgaagca 1381

                                                                        
Query: 745  tcaaatcctctaataattctttcattttctagcctgatgcttactctgcaaccgtcaccc 804
            ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1382 tcaaatcttctaataattctttcattttctagtctgatgcttactctgcaaccgtcaccc 1441

                                                                        
Query: 805  gatggttctggcactagtacanatttttttcaagccaa-catttctttttaagatggcct 863
            ||||||||||||||||||||| ||||| | |||||||| |||||||||||||| ||| ||
Sbjct: 1442 gatggttctggcactagtacagattttctccaagccaaccatttctttttaagttgg-ct 1500

                                                  
Query: 864  ttcttcgataacccattccctttctgggtccctttcta 901
            ||| ||||| ||||  ||||||||  ||||||||||||
Sbjct: 1501 ttcctcgattaccctatccctttcctggtccctttcta 1538


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8464
Number of Sequences: 1807
Number of extensions: 8464
Number of successful extensions: 378
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)