BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC37ZC10RM1.SCF screened BAC_end
         (932 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1316                                                        1425   0.0  

>3x_Contig1316 
          Length = 8178

 Score = 1425 bits (719), Expect = 0.0
 Identities = 808/835 (96%), Gaps = 2/835 (0%)
 Strand = Plus / Minus

                                                                        
Query: 48   aatgttaggcgtattatctacagagaaagagggacgatagatataaaaaaatgaatggtt 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6320 aatgttaggcgtattatctacagagaaagagggacgatagatataaaaaaatgaatggtt 6261

                                                                        
Query: 108  tgaaggtcgaatatgaaatcgataaattaatagagattgtggatgagagagacaggttaa 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6260 tgaaggtcgaatatgaaatcgataaattaatagagattgtggatgagagagacaggttaa 6201

                                                                        
Query: 168  tggatgtccttcacatgcaaccatctaaaaatgataacataaaacttaagaaacatataa 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6200 tggatgtccttcacatgcaaccatctaaaaatgataacataaaacttaagaaacatataa 6141

                                                                        
Query: 228  accatacacttgatttgctcaaagattatgaagatgatgtacccttttctgaagatgata 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6140 accatacacttgatttgctcaaagattatgaagatgatgtacccttttctgaagatgata 6081

                                                                        
Query: 288  gatttaatcatcagattaaaacttataatgatatcattgaaggcttgccagaaacagtca 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6080 gatttaatcatcagattaaaacttataatgatatcattgaaggcttgccagaaacagtca 6021

                                                                        
Query: 348  ttgacaaggaactctatagattcaaaagaaagcctaatctgagagaaacaaagaaggtac 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6020 ttgacaaggaactctatagattcaaaagaaagcctaatctgagagaaacaaagaaggtac 5961

                                                                        
Query: 408  ggtttaaagacggattagttgaagagcataaagaacccgaacagaagtttaaaccatata 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5960 ggtttaaagacggattagttgaagagcataaagaacccgaacagaagtttaaaccatata 5901

                                                                        
Query: 468  aagatgatgagtcttcatctacagttgtagatgatttattggaggtcaagagataggaat 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5900 aagatgatgagtcttcatctacagttgtagatgatttattggaggtcaagagaaaggaat 5841

                                                                        
Query: 528  tatttggaaatcaagagacaggaactccaaaatacaatatttctccacaagtttcaaatc 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5840 tatttggaaatcaagagacaggaactccaaaatacaatatttctccacaagtttcaaatc 5781

                                                                        
Query: 588  aggatattttcattcaacaacagcagcaattgatggaacaagagagccatctagaaaacc 647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5780 aggatattttcattcaacaacagcagcaattgatggaacaagagagccatctagaaaacc 5721

                                                                        
Query: 648  tgtcaagttctattaatatgacacaagggatatctatcgagattaacgatgaggtagaac 707
            |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5720 tgtcaagttctattaataggacacaaggaatatctatcgagattaacgatgaggtagaac 5661

                                                                        
Query: 708  agcaaaatgaacatcctcttaacggatattgagcgccaagtagattcgagtgaaagtcat 767
            |||||||||||||| ||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 5660 agcaaaatgaacat-ctcttaacggatattgagcgccaagtagatcgaagtgaaagtcat 5602

                                                                        
Query: 768  ttacaaaggcctgggagaagacttaatgctttccatccaccacttcggaagaaaggccct 827
            ||||||||| ||||||||||||||||||||| | |  || ||  |||  |||||||||||
Sbjct: 5601 ttacaaagggctgggagaagacttaatgcttacgaagcaacagctcgtgagaaaggccct 5542

                                                                   
Query: 828  tgccttctaaatggggattcttcctttaatactatcccttttagatataaattga 882
            || ||||  ||| | ||||||| || ||||||||| |||||||| ||||| ||||
Sbjct: 5541 tg-cttcctaattgtgattctttctataatactattccttttagttataatttga 5488


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8386
Number of Sequences: 1807
Number of extensions: 8386
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)