BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC37ZC11FM1.SCF screened BAC_end
         (906 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1640                                                        1392   0.0  

>3x_Contig1640 
          Length = 15521

 Score = 1392 bits (702), Expect = 0.0
 Identities = 751/767 (97%), Gaps = 1/767 (0%)
 Strand = Plus / Plus

                                                                         
Query: 85    ttgtcaattcgacgttctatgaactaggtccaacgtttcctatctagttgaaggtagccc 144
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11345 ttgtcaattcgacgttctatgaactaggtccaacgtttcctatctagttgaaggtagccc 11404

                                                                         
Query: 145   tacgtttgaagtcgttattgttttcttgctaaatactatgatcctccctattattgttat 204
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11405 tacgtttgaagtcgttattgttttcttgctaaatactatgatcctccctattattgttat 11464

                                                                         
Query: 205   ttttattgtaacaatcgcactttctttattttcaacactaattcaaggttaaaagacaaa 264
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11465 ttttattgtaacaatcgcactttctttattttcaacactaattcaaggttaaaagacaaa 11524

                                                                         
Query: 265   cgttctagacgcatataactgcattcagttcaggcattgatctcgagcgttaacaaacta 324
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11525 cgttctagacgcatataactgcattcagttcaggcattgatctcgagcgttaacaaacta 11584

                                                                         
Query: 325   gttggacaatttcagatgctcataaattgctgaagatccaggaatgttcagcacctcgaa 384
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11585 gttggacaatttcagatgctcataaattgctgaagatccaggaatgttcagcacctcgaa 11644

                                                                         
Query: 385   aggtagtatgtcagttcaaccaatatcgtaaaatagtgactgaagttttcttcacgtgac 444
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11645 aggtagtatgtcagttcaaccaatatcgtaaaatagtgactgaagttttcttcacgtgac 11704

                                                                         
Query: 445   ccatatctgtgaacggaggtttcaatattaattataacaaagacgatcctgggttggcag 504
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11705 ccagatctgtgaacggaggtttcaatattaattataacaaagacgatcctgggttggcag 11764

                                                                         
Query: 505   ataaaaactcggatcccttcactgcaaagtttatacacaaaaccatattccctcatttgt 564
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11765 agaaaaactcggatcccttcactgcaaagtttatacacaaaaccatattccctcatttgt 11824

                                                                         
Query: 565   cccaaacttcgtttcacgatggacaggccatggatactattcatagctgaacctgaatac 624
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11825 cccaaacttcgtttcacgatggacaggccatggatactattcatagctgaacctgaatac 11884

                                                                         
Query: 625   agtttacaggaatataagcttttgcaaaaagagttcaacacggttaattacacacttgaa 684
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11885 agtttacaggaatataagcttttgcaaaaagagttcaacacggttaattacacacttgaa 11944

                                                                         
Query: 685   cgatatgttgatggcactggtaaagaagcatttctaactttcttggaccagcatttcgag 744
             ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||   ||
Sbjct: 11945 cgagatgttgatggcactggtaaggaagcatttctaactttcttggaccagcattcgaag 12004

                                                                         
Query: 745   cantagggtccaattgtcggaatatttggatggta-ncacatttcgctccctttagtggn 803
             ||  |||||||||||||||||||||||||| ||||  |||| |||||||||||  |||| 
Sbjct: 12005 caaaagggtccaattgtcggaatatttggagggtatccacaattcgctcccttaggtggt 12064

                                                            
Query: 804   ttgagtgcagaaatcttggatgatcatcgttggcctgggtcgatcaa 850
             |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12065 ttgagtgcagaaatcttggatgatcatcgttggcctgggtcgatcaa 12111


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5751
Number of Sequences: 1807
Number of extensions: 5751
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)