BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZC11RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1581 1479 0.0
>3x_Contig1581
Length = 11429
Score = 1479 bits (746), Expect = 0.0
Identities = 843/867 (97%), Gaps = 7/867 (0%)
Strand = Plus / Minus
Query: 46 cgatgtgaaaaactcgggaaaactacagcattattatgagaatgactatgcatcgaaatt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10975 cgatgtgaaaaactcgggaaaactacagcattattatgagaatgactatgcatcgaaatt 10916
Query: 106 acttgcaaattgtggaatcaaagaatggttaaaattgaaaggttatgagtccttagcaca 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10915 acttgcaaattgtggaatcaaagaatggttaaaattgaaaggttatgagtccttagcaca 10856
Query: 166 aaaatgaaatattagcacgcaattacgctatcagaaaagtttaaatagaatgaaacctgt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10855 aaaatgaaatattagcacgcaattacgctatcagaaaagtttaaatagaatgaaacctgt 10796
Query: 226 acatatgatgaatgtaataaatatgatatgctaattaatttaaagatgtataaatttata 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10795 acatatgatgaatgtaataaatatgatatgctaattaatttaaagatgtataaatttata 10736
Query: 286 aaggttgtgtatctgattatgcagcgcatgaaaacgagataggaatgtatatagtagcca 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10735 aaggttgtgtatctgattatgcagcgcatgaaaacgagataggaatgtatatagtagcca 10676
Query: 346 ggttaaaattatgtattaatgatgtctcgatgttgaagggaaggcgtaagttttaaaaca 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10675 ggttaaaattatgtattaatgatgtctcgatgttgaagggaaggcgtaagttttaaaaca 10616
Query: 406 agtttgggaatagttgtggatggcattttagaatctcttcatattgaagcccactgctaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10615 agtttgggaatagttgtggatggcattttagaatctcttcatattgaagcccactgctaa 10556
Query: 466 tgtcttggaaatcatataacatatagcagagacaaatgacgtgacaccgcaccaaattac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10555 tgtcttggaaatcatataacatatagcagagacaaatgacgtgacaccgcaccaaattac 10496
Query: 526 atagtggtcatagcccttgaaactcttttctggtccgatgatggcacctgtaataggaac 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10495 atagtggtcatagcccttgaaactcttttctggtccgatgatggcacctgtaataggaac 10436
Query: 586 tgctactaaagtaccaaatgcgacaacaaagtacattgtagaatatcttcttccgaattc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10435 tgctactaaagtaccaaatgcgacaacaaagtacattgtagaatatcttcttccgaattc 10376
Query: 646 ttcagtctttgagatttgtccacagcagacaggtaagatactgaagatacttccggaaga 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10375 ttcagtctttgagatttgtccacagcagacaggtaagatactgaagatacttccggaaga 10316
Query: 706 taatnncataatggcactgaatgcgaat-acaccgctctggtagtggcaaaaggtaacca 764
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 10315 aaatccataaatggcactgaatgcgaataacaccgctctggtagtggcaaaaggtaacca 10256
Query: 765 cattcac-atagttattatgccaagaaacactagcgtaatcattgcaacgttaaaccttc 823
|| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10255 ca-tcacaaaagttattatgccaagaaacactagcgtaatcattgcaacgttaaaccttc 10197
Query: 824 cgagaatattactg-aggatcctggtaaccatcttccctggtat-ccggcnatgtttact 881
||| |||| |||| || ||||||||||||||| |||||||||| ||||| | ||| |||
Sbjct: 10196 cgaagatatcactgaagaatcctggtaaccatc-tccctggtataccggcaaggttaact 10138
Query: 882 tccatga-caatagaatactatcagat 907
|||||| ||||||| ||||||||||
Sbjct: 10137 accatgaccaatagataactatcagat 10111
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6296
Number of Sequences: 1807
Number of extensions: 6296
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)