BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZC12RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1775 1340 0.0
>3x_Contig1775
Length = 26320
Score = 1340 bits (676), Expect = 0.0
Identities = 741/759 (97%), Gaps = 3/759 (0%)
Strand = Plus / Minus
Query: 49 tcttgacccattcgtactgcttttctggtagtagatccttggcaaggaatttttccacag 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6169 tcttgacccattcgtactgcttttctggtagtagatccttggcaaggaatttttccacag 6110
Query: 109 tgttaatgtctgctcgcttttggagagtcttggagtcttcgccagtgattccagtgctag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6109 tgttaatgtctgctcgcttttggagagtcttggagtcttcgccagtgattccagtgctag 6050
Query: 169 aaccgaaaaatgagaaattattactgccgttggtcgtttctggttcatggggggatattt 228
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6049 aaccgaaaaatgagaaattattactgccgttggtcgtttctggttcagggggggatattt 5990
Query: 229 gatccctgtttctttccatctttgaaagactatcgctcatggaccgtatccacatcaatc 288
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5989 gatccctgtttctttccatctttgaaagactatcgctcagggaccgtatccacatcaatc 5930
Query: 289 ccaattcttgagtttttttgttcttcattatggagtcggtttgagatctgactgatttca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5929 ccaattcttgagtttttttgttcttcattatggagtcggtttgagatctgactgatttca 5870
Query: 349 gcgtttcgacggttcgttctcgtaatttactgccgacccagatttcgttaggaaatttga 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5869 gcgtttcgacggttcgttctcgtaatttactgccgacccagatttcgttaggaaatttga 5810
Query: 409 tccaggttatagcttcacacaatgcctcaatgctagctgctaaaactatcattctctcta 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5809 tccaggttatagcttcacacaatgcctcaatgctagctgctaaaactatcattctctcta 5750
Query: 469 atagtggtatcgtacatgctaccattagaccgatgctattggaacatatatcattataaa 528
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 5749 atagtggtatcgtacatgctaccattagaccgatgctattggaacatagatcattagaaa 5690
Query: 529 gtgcactccatttatctaatctgaacgtctgcaattgaacttcatgcaattcttccatga 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5689 gtgcactccatttatctaatctgaacgtctgcaattgaacttcatgcaattcttccatga 5630
Query: 589 cttccaactttgttactcctatataaaacaattcttgtaatgcgttcttgtgttcttcct 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5629 cttccaactttgttactcctatataaaacaattcttgtaatgcgttcttgtgttcttcct 5570
Query: 649 tt-acaatgtttcaacaaactcgaagtaaagctccgttagccttcattctcaggtgtctg 707
|| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 5569 ttaacaatgtttcaacaaactcgaagtaaggctccgttag-cttcattctcaggtgtctg 5511
Query: 708 tgcaactgtttttaattatcggaggagggcacttttctcccgtgttggcttgatcaattt 767
|||||||| |||||| ||||||||||||||||| | |||| |||||| ||||||||||||
Sbjct: 5510 tgcaactg-ttttaaatatcggaggagggcactatactcctgtgttgtcttgatcaattt 5452
Query: 768 gnaaatattcggttcttgtaagaatgtttagtctaacac 806
| |||||||||| ||||||| ||||||| |||||||||
Sbjct: 5451 gtaaatattcggatcttgtaggaatgttaggtctaacac 5413
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6806
Number of Sequences: 1807
Number of extensions: 6806
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)