BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD01FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig995 585 e-167
>3x_Contig995
Length = 2553
Score = 585 bits (295), Expect = e-167
Identities = 353/371 (95%), Gaps = 1/371 (0%)
Strand = Plus / Minus
Query: 498 taaatccttggcttaagatgtactcatggaataattgtactcgttttccagatacaggga 557
||||||||| ||||| || |||||| ||||||||||||| ||||||| |||||||||
Sbjct: 2424 taaatccttttcttaatattaactcatttaataattgtactctttttccatatacaggga 2365
Query: 558 atctattgtagaattctcttgaatctgatttcaactccgaaatgaagcttgatttagtaa 617
||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2364 atctattttataattctctttaatctgatttcaactccgaaatgaagcttgatttagtaa 2305
Query: 618 aagttccctggaattgttttatagaatccgacactgccaatgcatcggcaaacccataga 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2304 aagttccctggaattgttttatagaatccgacactgccaatgcatcggcaaacccataga 2245
Query: 678 tattgcgagcgaccatagtcataccattgaaagtctcgattactgatttgttattattgt 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2244 tattgcgagcgaccatagtcataccattgaaagtctcgattactgatttgttattattgt 2185
Query: 738 ataagaagttcttttcgattccagcagacaatccaaattgagactgtttgtgttcgtcag 797
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2184 ataagaagttcttttcgataccagcagacaatccaaattgagactgtttgtgttcgtcag 2125
Query: 798 attcacccgatgaagggttgcttgaattattccaactaagtgtggtttgcataaactgcc 857
||||| ||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||
Sbjct: 2124 attca-ccgatgaagggttgcttgaataagtccaagtaagtgtggttagcataaactgcc 2066
Query: 858 gcttttacaga 868
|||||||||||
Sbjct: 2065 gcttttacaga 2055
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6110
Number of Sequences: 1807
Number of extensions: 6110
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)