BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD01RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1509 1411 0.0
>3x_Contig1509
Length = 8584
Score = 1411 bits (712), Expect = 0.0
Identities = 777/797 (97%), Gaps = 2/797 (0%)
Strand = Plus / Minus
Query: 49 ctttaaaatgcggttcacttcacaactgttagaatacaaatatctgcatcgaaaattttc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7057 ctttaaaatgcggttcacttcacaactgttagaatacaaatatctgcatcgaaaattttc 6998
Query: 109 gactgggaatgacataaaagaaggtttagttaacgagtagctttgattttttaatcgaat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6997 gactgggaatgacataaaagaaggtttagttaacgagtagctttgattttttaatcgaat 6938
Query: 169 agaccgaaacccatgtcatcgtcagattcttccttttcttcttccttttcttcttccttt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6937 agaccgaaacccatgtcatcgtcagattcttccttttcttcttccttttcttcttccttt 6878
Query: 229 tcttcttcagcagaagcgccagcagcaccagaagcagcagcagcaccagaggcaccacca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6877 tcttcttcagcagaagcgccagcagcaccagaagcagcagcagcaccagaggcaccacca 6818
Query: 289 gctgggacagaagccaacttggtttgaccttcagcaaccaattcttggatggtcttacct 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6817 gctgggacagaagccaacttggtttgaccttcagcaaccaattcttggatggtcttacct 6758
Query: 349 tccaaagaggtcaacaaagcttgaatcttagagtcttcagcttcaacaccaacggcttca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6757 tccaaagaggtcaacaaagcttgaatcttagagtcttcagcttcaacaccaacggcttca 6698
Query: 409 agaacgttcttgatttcagtagcggatggagattcaacaccaccttgagcgatcaacaag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6697 agaacgttcttgatttcagtagcggatggagattcaacaccaccttgagcgatcaacaag 6638
Query: 469 taagctgccaagtacttcatttctggtccggttttattttgaaataatcgatttaagcaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6637 taagctgccaagtacttcatttctggtccggttttattttgaaataatcgatttaagcaa 6578
Query: 529 gaagcagactattccttggtctattaggaaatatgataataaataaataacaaaccagaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6577 gaagcagactattccttggtctattaggaaatatgataataaataaataacaaaccagaa 6518
Query: 589 agaacaagatacanagagaggtttaagtatataataaatattcgaattatatagccctgt 648
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 6517 agaacaagaaacaaagagaggtttaagtatataataaatattcgaattatatagccttgt 6458
Query: 649 atttagttgaacaagttntaaactctnctcatctctatttttttttcttcattttcatcc 708
||| ||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 6457 attaagttgaacaagttttaaactcttctcatctctatttttttttcttcaatttcatcc 6398
Query: 709 cagaatctttgcatcatcgggaaaaatttcagactattctttgttatcatgtacgaccac 768
|||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 6397 aagaaactttgcatcatcgtgaaaaatttcagactattctttgtaatcatgtacgaccac 6338
Query: 769 tcgctaattgtgggttgcctcatgaaaaaag-tactaatcattattcccgaaaat-caac 826
||||||||||| ||||| ||||||||||||| ||||||||||||| | || |||| ||||
Sbjct: 6337 tcgctaattgttggttgtctcatgaaaaaagttactaatcattatacacggaaatacaac 6278
Query: 827 cacaccgttatttgaat 843
|||| || |||||||||
Sbjct: 6277 cacaacgatatttgaat 6261
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,577
Number of Sequences: 1807
Number of extensions: 11577
Number of successful extensions: 296
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)