BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD02FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1697 1606 0.0
>3x_Contig1697
Length = 16220
Score = 1606 bits (810), Expect = 0.0
Identities = 826/830 (99%), Gaps = 1/830 (0%)
Strand = Plus / Minus
Query: 86 aaacagcatagaaactttatcgaaaatcaattgccccgtatcaggtttacaagactcaat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8607 aaacagcatagaaactttatcgaaaatcaattgccccgtatcaggtttacaagactcaat 8548
Query: 146 tcccttaacttttacatcagtcccgtcttaccagcgatcttcgatgacgttaccatttca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8547 tcccttaacttttacatcagtcccgtcttaccagcgatcttcgatgacgttaccatttca 8488
Query: 206 aacaacttaacgaaactaacgatagctggcaacaagaaaatcaatgacgaagagttaatc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8487 aacaacttaacgaaactaacgatagctggcaacaagaaaatcaatgacgaagagttaatc 8428
Query: 266 tcactgattttggggctgccgaatttgatagatttagacctacgtgcatgttctcagatc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8427 tcactgattttggggctgccgaatttgatagatttagacctacgtgcatgttctcagatc 8368
Query: 326 agtgacatttccatcgtttctatcgtaacgcactgtcccaaactacaaagtataaacttg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8367 agtgacatttccatcgtttctatcgtaacgcactgtcccaaactacaaagtataaacttg 8308
Query: 386 gggcgtcatgaaaactcgcatttgattactgatctttcaatcatggcactatctgagtta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8307 gggcgtcatgaaaactcgcatttgattactgatctttcaatcatggcactatctgagtta 8248
Query: 446 gaacatcttactacggtcggtttctcaggatgcgacaagatctctgacgtatcaatatgg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8247 gaacatcttactacggtcggtttctcaggatgcgacaagatctctgacgtatcaatatgg 8188
Query: 506 caactgtacagcaaacattcaacaacgctggttcgattgtcaataaatggctgcacacaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8187 caactgtacagcaaacattcaacaacgctggttcgattgtcaataaatggctgcacacaa 8128
Query: 566 atatcagatagtagcattagcgatatcgttgccaagcatggatttccaaatctgaaagtc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8127 atatcagatagtagcattagcgatatcgttgccaagcatggatttccaaatctgaaagtc 8068
Query: 626 ttagatatccggaactgtcaactggttcgtttcaaaaacttaatccaataccgtgactgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8067 ttagatatccggaactgtcaactggttcgtttcaaaaacttaatccaataccgtgactgg 8008
Query: 686 agacacaaatatctgatgaaaccgatacatatccatatcagtgattcgatgaagaaagaa 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8007 agacacaaatatctgatgaaaccgatacatatccatatcagtgattcgatgaagaaagaa 7948
Query: 746 ttcgaattgcaagaacagcagctatacaaggaattcagaactcggatcgtcaacgatcta 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7947 ttcgaattgcaagaacagcagctatacaaggaattcagaactcggatcgtcaacgatcta 7888
Query: 806 aatagatgggtcaacgaagcgacctgagat-aaaaaataatctgagagactctcatacgt 864
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 7887 aatagatgggtcaacgaagcgacctgagataaaaaaataatctgagagactctcatacgt 7828
Query: 865 tataccatcagcaggtatattaccactgcttccatcgtatcatgacacta 914
|||||||||||||||||||| ||||||||| | |||||||||||||||||
Sbjct: 7827 tataccatcagcaggtatataaccactgctccaatcgtatcatgacacta 7778
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5865
Number of Sequences: 1807
Number of extensions: 5865
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)