BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD02RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1506 1415 0.0
>3x_Contig1506
Length = 7652
Score = 1415 bits (714), Expect = 0.0
Identities = 834/862 (96%), Gaps = 10/862 (1%)
Strand = Plus / Minus
Query: 46 tctgatagaccaactttgatcaagttgaccaccactatcggtttcggttctctgaatgct 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3938 tctgatagaccaactttgatcaagttgaccaccactatcggtttcggttctctgaatgct 3879
Query: 106 ggttctcactccgttcacggtgccccattgaaggctgatgatgtcaagcaattgaaggtc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3878 ggttctcactccgttcacggtgccccattgaaggctgatgatgtcaagcaattgaaggtc 3819
Query: 166 aaattcggtttcaacccagaagaatccttcgttgttccacaagaagtttacgatctttac 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3818 aaattcggtttcaacccagaagaatccttcgttgttccacaagaagtttacgatctttac 3759
Query: 226 aacaaatccaccatcgaaccaggtatcgaagccaacaagcaatgggatgctttattggac 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3758 aacaaatccaccatcgaaccaggtatcgaagccaacaagcaatgggatgctttattggac 3699
Query: 286 gcttacgttggccagttcccagaattaggtgctgaagtcaagagaagattagcaggtgaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3698 gcttacgttggccagttcccagaattaggtgctgaagtcaagagaagattagcaggtgaa 3639
Query: 346 ttcccagaaggttgggaatccaagttgccaacttacaccccagaagactctgccgtcgcc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3638 ttcccagaaggttgggaatccaagttgccaacttacaccccagaagactctgccgtcgcc 3579
Query: 406 tccagaaagttgtctgaaatcgttttggataacgttttcgacactttgccagaattgttg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3578 tccagaaagttgtctgaaatcgttttggataacgttttcgacactttgccagaattgttg 3519
Query: 466 ggtggttccgctgatttgaccccatccaacttgaccagatctaagggtgccgttgacttc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3518 ggtggttccgctgatttgaccccatccaacttgaccagatctaagggtgccgttgacttc 3459
Query: 526 caacctccaatcactggtctaggtgattactccggtagatacatcagatacggtgttcgt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3458 caacctccaatcactggtctaggtgattactccggtagatacatcagatacggtgttcgt 3399
Query: 586 gaacatggtatgggtgctatcatgaacggtatctctgccttttgtgcttactacagacca 645
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 3398 gaacatggtatgggtgctatcatgaacggtatctctgcctttggtgctaactacagacca 3339
Query: 646 tacngtggtaccttcttgaacttcgtttcttacgcttncggtgcagtcagattgttcgct 705
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 3338 tacggtggtaccttcttgaacttcgtttcttacgcttccggtgcagtcagattgtccgct 3279
Query: 706 ttgt-cggacacccattc-ttttggtcgncactcacgactctattcgttttgggtgaaga 763
|||| |||||||||| || | | ||||| |||||||||||||| ||| ||||||||||||
Sbjct: 3278 ttgtccggacacccagtcatctgggtcgccactcacgactcta-tcggtttgggtgaaga 3220
Query: 764 tggtccancccatcaacctatcgaaaccttggctcactttcagagctttttcaatcctac 823
||||||| ||||||||||||||||||||||||||||| ||||||||| || ||| |||||
Sbjct: 3219 tggtccaacccatcaacctatcgaaaccttggctcac-ttcagagctattccaaacctac 3161
Query: 824 -agtattggagaccagccgatggttaacgaaagtccctggttgcttacaaggtccgcttt 882
|||| ||||||||||||||||| ||||| ||||| || | |||||||||||| ||||||
Sbjct: 3160 aagta-tggagaccagccgatgg-taacg-aagtcact-gctgcttacaaggt-cgcttt 3106
Query: 883 gacttacaaacccactccagct 904
|||| |||||| ||||||||||
Sbjct: 3105 gactaacaaacacactccagct 3084
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4870
Number of Sequences: 1807
Number of extensions: 4870
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)