BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD03FM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1637 1124 0.0
3x_Contig790 412 e-115
>3x_Contig1637
Length = 14855
Score = 1124 bits (567), Expect = 0.0
Identities = 613/625 (98%), Gaps = 3/625 (0%)
Strand = Plus / Minus
Query: 350 ttatgagcaggaatttgcagatcgtcatcaaaagtgaactggaagtcaaaattattaaca 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14854 ttatgagcaggaatttgcagatcgtcatcaaaagtgaactggaagtcaaaattattaaca 14795
Query: 410 atatcatcattcattaacgatgaaaggtgcgaggcaaacggttgcttgacatcaactgcc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14794 atatcatcattcattaacgatgaaaggtgcgaggcaaacggttgcttgacatcaactgcc 14735
Query: 470 ttagatatatcgtattttagtaaaatgttacgaatggaatcagtcaaggcaccataaatg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14734 ttagatatatcgtattttagtaaaatgttacgaatggaatcagtcaaggcaccataaatg 14675
Query: 530 catctagcaccttcgtatctatctctatcgcaaacagaacctcttcgtagtaacaaattt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14674 catctagcaccttcgtatctatctctatcgcaaacagaacctcttcgtagtaacaaattt 14615
Query: 590 acaacatcttcatgaccacataagctggctaaaaataatggcgaattgtcaaactcatct 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14614 acaacatcttcatgaccacataagctggctaaaaataatggcgaattgtcaaactcatct 14555
Query: 650 acaccgttgacattaactccagtagaaattaatcgatctgcattctcaacatcgcctatc 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14554 acaccgttgacattaactccagtagaaattaatcgatctgcattctcaacatcgcctatc 14495
Query: 710 ctacaagcaaaacacaactccaagatattcttattctgatttagcagtggatttttagca 769
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 14494 ctacaagcaaaacacaactccaagaaattcttattctgatttagcagtggatttttagca 14435
Query: 770 ctattatcaaccattaccaaccccaaacggaccctttcaccaagcaactttttatgttta 829
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 14434 ctagtatcaaccattaccaaccccaaacggaccctttcaccaagcaactttttatgttaa 14375
Query: 830 aaactgaaatgattcctgaatcaaatggtccctaaaatgcgagccccaatgtctatcgga 889
|||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 14374 aaactgaattgattcctgaatcaaatggtccctaaattgcgagcccaaatgtctatcgga 14315
Query: 890 ctttctgaaagatcgacatttncttaatnattattggagcttttttcatcttttaattga 949
||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||
Sbjct: 14314 ctttctgaaagatcgacattttcttagtaatta-tggagcttttttcatcttttaattga 14256
Query: 950 tggcaagttcaatccgattttaaag 974
||||||| ||||| |||||||||||
Sbjct: 14255 tggcaag-tcaat-cgattttaaag 14233
>3x_Contig790
Length = 4570
Score = 412 bits (208), Expect = e-115
Identities = 274/296 (92%)
Strand = Plus / Minus
Query: 87 ccctctctgatgggtcagatacgtgcatggttttatcaaggtacgataggagatccggaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ccctctctgatgggtcagatacgtgcatggttttatcaaggtacgataggagatccggaa 248
Query: 147 atcccgacttcatagataggaggtggatatgttttaattggtcttgctttaattcatgta 206
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 247 atcccgacttcatagataggaggtggatatgttttacttggtcttgctttaattcatgta 188
Query: 207 agacaggtactaaataaatgaacttcaatattgaacggaacgcctctatatctgatccgg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 187 agacaggtactaaataaatgaacttcaatattgaacggaacgcctctatatctgacccgg 128
Query: 267 taggcattctcttggatttcaatgttgcccatggaccactgaatttctgcctgaaataac 326
|||||||||||||| ||||||||||| |||||| |||||| ||||||| ||| | ||||
Sbjct: 127 taggcattctcttgtatttcaatgtttcccatgtaccacttaatttcttccttatttaac 68
Query: 327 ttgatcgtgccgccagtataaacttatgagcaggaatttgcagatcgtcatcaaaa 382
|| ||| | || ||| ||||||||||| | || ||||| || ||| |||||||||
Sbjct: 67 tttatctttcctccattataaacttattatcattaattttcatatcttcatcaaaa 12
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6265
Number of Sequences: 1807
Number of extensions: 6265
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 2
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)