BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD03RM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig661 1318 0.0
>3x_Contig661
Length = 2026
Score = 1318 bits (665), Expect = 0.0
Identities = 707/721 (98%)
Strand = Plus / Plus
Query: 49 tgatgacttttccaggttccaagacaagacgtctgttcatctacaacaagtgaagtcaaa 108
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 610 tgatgacttttccaggttccaagacaagacgtctgttcatctaaaacaagtgaagtcaaa 669
Query: 109 ggaccaatttaacagatgggtttactgtttaattggacaattgagactagcgggactaga 168
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 670 ggaccaatttaccagatgggttaactgtttaattggacaattgagactagcgggactaga 729
Query: 169 gagttttatcccgaacaaaagcaatgactggtccataaatataattgacaacgacgaatt 228
||||||||||||||||||| ||| ||||||||||||||| | || | |||||||||||||
Sbjct: 730 gagttttatcccgaacaaacgcactgactggtccataaaaaaaactcacaacgacgaatt 789
Query: 229 atcaaattcaattgttttcttctgggaagaatgtgtcccgaaggaatgctgtccagaatg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 atcaaattcaattgttttcttctgggaagaatgtgtcccgaaggaatgctgtccagaatg 849
Query: 289 ggttcaaatggcaccttatggcatgggatttaatcctgaaagtgcagtatacaatctatt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 ggttcaaatggcaccttatggcatgggatttaatcctgaaagtgcagtatacaatctatt 909
Query: 349 aaatgattatgataggttgaataaaaatatagacatatggaaagaagctgtcaggcacct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 aaatgattatgataggttgaataaaaatatagacatatggaaagaagctgtcaggcacct 969
Query: 409 gcaaaaagataagacttcaccaaacctacaaacattatggttagaacgtactaagatgta 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 gcaaaaagataagacttcaccaaacctacaaacattatggttagaacgtactaagatgta 1029
Query: 469 tcacaaattccatgtacgtgagaaataccgtgatatagattcactgttacagtgtttaac 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 tcacaaattccatgtacgtgagaaataccgtgatatagattcactgttacagtgtttaac 1089
Query: 529 tgaaatgacagtggaagctattgcagatagatcatatatggtaaaccaagaactgtctaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1090 tgaaatgacagtggaagctattgcagatagatcatatatggtaaaccaagaactgtctaa 1149
Query: 589 aaacaataaactagacataccatcagcactgagtttggtgagtcttgaatctagaaactc 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1150 aaacaataaactagacataccatcagcactgagtttggtgagtcttgaatctagaaactc 1209
Query: 649 tgtaaagtcaaaacgtgcgaatctaagcgaagatgattagggaagataacccaagatatt 708
||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| |||
Sbjct: 1210 tgtaaagtcaaaacgtgcgaatctaagcgaagaagataagggaagaaaacccaagaaatt 1269
Query: 709 ccagaaccaattggaacaatgattccaatggtactaataggcacaaaaagtcaggtaaga 768
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1270 ccagaaccaattggaacaaggattccaatggtactaataggcacaaaaagtcaggtaaga 1329
Query: 769 a 769
|
Sbjct: 1330 a 1330
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6767
Number of Sequences: 1807
Number of extensions: 6767
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)