BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD04FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1624 1483 0.0
>3x_Contig1624
Length = 12551
Score = 1483 bits (748), Expect = 0.0
Identities = 798/814 (98%), Gaps = 1/814 (0%)
Strand = Plus / Plus
Query: 86 ctatcatatttatcctttgacataatgctttgacagaattgtctttaatttagtttctgt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11121 ctatcatatttatcctttgacataatgctttgacagaattgtctttaatttagtttctgt 11180
Query: 146 taaaaagaagagatcggaaagaaagacaattgcactttctttagtacctgctttagcaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11181 taaaaagaagagatcggaaagaaagacaattgcactttctttagtacctgctttagcaat 11240
Query: 206 caactcagtcaactattctattaccaatttcccaatgagttctgcaggagatcaataatt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11241 caactcagtcaactattctattaccaatttcccaatgagttctgcaggagatcaataatt 11300
Query: 266 aagagttataccaacagatcttgattccagtataaaaaaactctgcgattctttttagga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11301 aagagttataccaacagatcttgattccagtataaaaaaactctgcgattctttttagga 11360
Query: 326 gcaagacgtaggatctcttgatcaacttgctttctgctatcactgtctctaccgatagca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11361 gcaagacgtaggatctcttgatcaacttgctttctgctatcactgtctctaccgatagca 11420
Query: 386 atgtcttcaccgctggcgatactcttggtagtatgtttcctatcgactattgtcaactat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11421 atgtcttcaccgctggcgatactcttggtagtatgtttcctatcgactattgtcaactat 11480
Query: 446 ggactgggattgttcaaagctaaaacctctttattgaaataatgaatctgaaaagcttgg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11481 ggactgggattgttcaaagctaaaacctctttattgaaataatgaatctgaaaagcttgg 11540
Query: 506 atcagattcagattcgatttggaaactaacctattgaggaagtaacaaaacaataataaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11541 atcagattcagattcgatttggaaactaacctattgaggaagtaacaaaacaataataaa 11600
Query: 566 gaaacagcaagggacaacaaaccagataagttcaaaaagaaaaaacaggctcactccaat 625
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 11601 gaaacagcaagggacaacaaaccagaaaagttcaaaaagaaaaaacaggctcactccaat 11660
Query: 626 cggaacaatacaaattcttcaccagttgtatggaaagattcaccgaaaaagctttaagaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11661 cggaacaatacaaattcttcaccagttgtatggaaagattcaccgaaaaagctttaagaa 11720
Query: 686 ccgtgagaagcttttgtgatcgttcgctttaagcctactttttctctatcgtcactgaga 745
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 11721 ccgtgagaagcttttgtgatcgttcgcttaaagcctactttttctctatcgtcactgaga 11780
Query: 746 cagacgcagcanaaacttcgtactttctagataaagaagaatacctcactacagatgctt 805
||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 11781 cagacgcagcaaaaacttcttacttctaagataaagaagaatacctcactacagatgctt 11840
Query: 806 caactgtcgggagaagtagcaccaaagaaatttt-aatgtctacaaagaacctttacgtt 864
|||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||
Sbjct: 11841 caactgtcgggagaagtagcacaaaagaaattttaaatgtctacaaagaacctctacgtt 11900
Query: 865 gatttatgggcttatancagaagccccttccctt 898
||||||||| | ||| |||| |||||| |||||
Sbjct: 11901 gatttatggcttcatagcagacgcccctcccctt 11934
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7894
Number of Sequences: 1807
Number of extensions: 7894
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)