BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD04RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig661 954 0.0
3x_Contig1648 200 4e-51
3x_Contig540 159 1e-38
3x_Contig1709 155 2e-37
3x_Contig1088 151 3e-36
3x_Contig1769 149 1e-35
3x_Contig1787 147 5e-35
3x_Contig1464 135 2e-31
3x_Contig1605 127 4e-29
3x_Contig1803 119 1e-26
>3x_Contig661
Length = 2026
Score = 954 bits (481), Expect = 0.0
Identities = 576/596 (96%), Gaps = 9/596 (1%)
Strand = Plus / Minus
Query: 48 tatattcgctgtc-cacgagttgttattcttcttggaataactaaacaacagactgcttc 106
||||||||||||| ||||||||||| ||| ||||||| | |||||||||||||||||||
Sbjct: 603 tatattcgctgtcacacgagttgtttttcgtcttggattttctaaacaacagactgcttc 544
Query: 107 gatatctgtattccctatcaaa-cacttcgtaagtacttcctccaaatatctctctctcg 165
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 543 gatatctgtattccctatcaaaacact-cgtaagtacttcctccaaatatctctctctcg 485
Query: 166 ggatctaagtctgagtatgggttaacatttttatcctcttttaaactctgtttaggagca 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ggatctaagtctgagtatgggttaacatttttatcctcttttaaactctgtttaggagca 425
Query: 226 ctaccatcactaacgatatcgagtctttgtatatcttcacagatacctctt-gtcggat- 283
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 424 ctaccatcactaacgatatcgagtctttgtatatcttcacagatacctctttgtcggatt 365
Query: 284 cattacttccttgcggagactcagtgacgctgccat-gtaggtgatcctggttgtcgcag 342
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 364 cattacttccttgcggagactcagtgacgctgccattgtaggtgatcctggttgtcgcag 305
Query: 343 tcacagtcacgtgtaatt-aattcaaaaccttcggtatcagatgaatccatagtgtttac 401
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 304 tcacagtcacgtgtaatttaattcaaaac-ttcggtatcagatgaatccatagtgtttac 246
Query: 402 tagctatatatagctagtgtgttgatgcacctggcgatctgtcatgactgtgttgatggt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctatatatagctagtgtgttgatgcacctggcgatctgtcatgactgtgttgatggt 186
Query: 462 ctttccccagatctatggcctctttatataataactcagattgg-ttaatgatgtttcat 520
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 185 ctttccccagatctatggcctctttatataataactcagattggtttaatgatgtttcat 126
Query: 521 gttgatacttgaccgtctattagttctaatccgtctcaacagataacccgccgaatgatc 580
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 125 gttgatacttgaccgtctattgtttctaatccgtctcaacagataacccgccgaatgatc 66
Query: 581 tanaaaatcttgtaaatttgtaatagatttcgtgcctccttagcttagtggtagag 636
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 taaaaaatctgtaaaatttgtaatagatttcgtgcctccttagcttagtggtagag 10
>3x_Contig1648
Length = 16375
Score = 200 bits (101), Expect = 4e-51
Identities = 169/189 (89%), Gaps = 2/189 (1%)
Strand = Plus / Plus
Query: 613 tgcctccttagcttagtggtagagcgttgcactttgtatgcaaaggtcgctagttcattc 672
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 6160 tgcctccttagcttagtggtagagcgttgcacttgtaatgcaaaggtcgctagttcaatt 6219
Query: 673 ctggcaggtgccattcattttttttcattatccaatctgaccttcctcgaatctattttt 732
|||||||||| |||| | | ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 6220 ctggcaggtggcattta-tctttttcaatatccaatctgaccttcctcgaatctattttt 6278
Query: 733 tttttttttaagtaacattgtggcccttaaactagcaattcgggccgtctaaaaccctgt 792
||||| || |||||||||||| || || ||||||||||| ||| ||||||||||| |||
Sbjct: 6279 tttttcttaaagtaacattgt-gcactaaaactagcaatacggtacgtctaaaaccatgt 6337
Query: 793 tttccctat 801
||||||||
Sbjct: 6338 attccctat 6346
>3x_Contig540
Length = 1644
Score = 159 bits (80), Expect = 1e-38
Identities = 156/178 (87%), Gaps = 5/178 (2%)
Strand = Plus / Plus
Query: 346 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 405
||||||||||| ||| ||||| | ||| |||||| ||||||||||||||||||| ||||
Sbjct: 1119 cagtcacgtgttgttatttcaagatctttggtatctgatgaatccatagtgtttattagc 1178
Query: 406 tatatat--agctagtg--tgttgatgcacctggcgatctgtcatgactgtgttgatggt 461
||||||| || ||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1179 tatatatctag-tagtgaatgttgatgcacctggcgatctggcatgactgtgttgatggt 1237
Query: 462 ctttccccagatctatggcctctttatataataactcagattggttaatgatgtttca 519
| || |||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 1238 ccttgttcagatctaatgcctccttatataataattcagattggttaatgatgtttca 1295
>3x_Contig1709
Length = 16948
Score = 155 bits (78), Expect = 2e-37
Identities = 154/177 (87%), Gaps = 3/177 (1%)
Strand = Plus / Minus
Query: 346 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 405
||||||||||| |||| | |||| ||| |||||| | ||||||||||||||||| ||||
Sbjct: 12761 cagtcacgtgttgttaaattaaaatctttggtatctggtgaatccatagtgtttattagc 12702
Query: 406 tatatat--agcta-gtgtgttgatgcacctggcgatctgtcatgactgtgttgatggtc 462
||||||| || | || ||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 12701 tatatatctagtaatgtatgttgatgcacctggtgatctgtcatgactgtgttgatcgtc 12642
Query: 463 tttccccagatctatggcctctttatataataactcagattggttaatgatgtttca 519
||| ||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 12641 tttgtccagatctaatacctccttatataataactcagattggttaatgatgtttca 12585
>3x_Contig1088
Length = 4585
Score = 151 bits (76), Expect = 3e-36
Identities = 155/178 (87%), Gaps = 5/178 (2%)
Strand = Plus / Plus
Query: 346 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 405
||||||||||| || ||||| | ||| |||||| ||||||||||||||||||| ||||
Sbjct: 1128 cagtcacgtgttgttgtttcaagatctttggtatctgatgaatccatagtgtttattagc 1187
Query: 406 tatatat--agctagtgt--gttgatgcacctggcgatctgtcatgactgtgttgatggt 461
||||||| || |||||| ||||||||||||||||||||| |||||| |||||||||||
Sbjct: 1188 tatatatctag-tagtgtatgttgatgcacctggcgatctggcatgaccgtgttgatggt 1246
Query: 462 ctttccccagatctatggcctctttatataataactcagattggttaatgatgtttca 519
| || |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1247 ccttgttcagatctaatgcctccttatataataactcagattggttaatgatgtttca 1304
>3x_Contig1769
Length = 25795
Score = 149 bits (75), Expect = 1e-35
Identities = 133/149 (89%), Gaps = 5/149 (3%)
Strand = Plus / Minus
Query: 375 ggtatcagatgaatccatagtgtttactagctatatat--agctagtgt--gttgatgca 430
|||||| |||||||||||| | |||| ||||||||||| || |||||| |||||||||
Sbjct: 24414 ggtatctgatgaatccatattctttattagctatatatctag-tagtgtatgttgatgca 24356
Query: 431 cctggcgatctgtcatgactgtgttgatggtctttccccagatctatggcctctttatat 490
||| |||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||
Sbjct: 24355 cctagcgatctgtcatgactgtgttgatcgtctttgtccagatctaatgcctccttatat 24296
Query: 491 aataactcagattggttaatgatgtttca 519
|||||||||||||||||||||||||||||
Sbjct: 24295 aataactcagattggttaatgatgtttca 24267
>3x_Contig1787
Length = 34189
Score = 147 bits (74), Expect = 5e-35
Identities = 153/177 (86%), Gaps = 3/177 (1%)
Strand = Plus / Plus
Query: 346 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 405
||||||||||| |||| | || | ||| |||||| ||| ||||||||||||||| ||||
Sbjct: 14224 cagtcacgtgttgttaaattaagatctttggtatctgataaatccatagtgtttattagc 14283
Query: 406 tatatat--agcta-gtgtgttgatgcacctggcgatctgtcatgactgtgttgatggtc 462
||||||| || | || |||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 14284 tatatatctagtaatgtatgttgatgcacctggcgatctggcatgactgtgttgattgtc 14343
Query: 463 tttccccagatctatggcctctttatataataactcagattggttaatgatgtttca 519
|| ||| |||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 14344 cttacccggatctaatgcctccttatataataactcagattggttaatgatgtttca 14400
>3x_Contig1464
Length = 11693
Score = 135 bits (68), Expect = 2e-31
Identities = 153/178 (85%), Gaps = 5/178 (2%)
Strand = Plus / Minus
Query: 346 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 405
||||||||||| || ||||| | ||| |||||| ||||||||||||||||||| ||||
Sbjct: 5557 cagtcacgtgttgttgtttcaagatctttggtatctgatgaatccatagtgtttattagc 5498
Query: 406 tatatat--agctagtgt--gttgatgcacctggcgatctgtcatgactgtgttgatggt 461
||||||| || |||||| ||||||| ||||||||||||| ||||||||||| ||||||
Sbjct: 5497 tatatatctag-tagtgtatgttgatgtacctggcgatctggcatgactgtgtcgatggt 5439
Query: 462 ctttccccagatctatggcctctttatataataactcagattggttaatgatgtttca 519
| || |||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 5438 ccttgttcagatctaatgcctccttatataataattcagattggttaatgatgtttca 5381
>3x_Contig1605
Length = 12373
Score = 127 bits (64), Expect = 4e-29
Identities = 152/178 (85%), Gaps = 5/178 (2%)
Strand = Plus / Minus
Query: 346 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 405
||||||||||| |||| | || | ||| |||||| ||||||||||||| ||||| ||||
Sbjct: 315 cagtcacgtgttgttaaattaagatctttggtatctgatgaatccatagcgtttattagc 256
Query: 406 tatatat--agctagtgt--gttgatgcacctggcgatctgtcatgactgtgttgatggt 461
||||||| || |||||| ||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 255 tatatatctag-tagtgtatgttgatgcacctggcgatctggcatgactgtgttgatcgt 197
Query: 462 ctttccccagatctatggcctctttatataataactcagattggttaatgatgtttca 519
| || |||||| | ||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 196 ccttgtacagatccaatgcctccttatataataactcagattggttgatgatgtttca 139
>3x_Contig1803
Length = 52241
Score = 119 bits (60), Expect = 1e-26
Identities = 130/150 (86%), Gaps = 5/150 (3%)
Strand = Plus / Plus
Query: 375 ggtatcagatgaatccatagtgtttactagctatatat--agctagtgt--gttgatgca 430
|||||| ||||||||||||| ||||| ||||||||||| || |||||| |||||||||
Sbjct: 34931 ggtatctgatgaatccatagcgtttattagctatatatccag-tagtgtatgttgatgca 34989
Query: 431 cctggcgatctgtcatgactgtgttgatggtctttccccagatctatggcctctttatat 490
||||| |||||| ||||||||| ||||||||| || ||||||||| ||||| ||||||
Sbjct: 34990 cctggggatctggcatgactgtattgatggtccttgtccagatctaatgcctccttatat 35049
Query: 491 aataactcagattggttaatgatgtttcat 520
||||| ||||||| ||||||||| ||||||
Sbjct: 35050 aataattcagattagttaatgatatttcat 35079
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,533
Number of Sequences: 1807
Number of extensions: 14533
Number of successful extensions: 397
Number of sequences better than 1.0e-20: 10
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)