BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD05FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1439 0.0
>3x_Contig1801
Length = 57606
Score = 1439 bits (726), Expect = 0.0
Identities = 796/818 (97%), Gaps = 1/818 (0%)
Strand = Plus / Minus
Query: 87 ttgttgacaactttctcatttttccatgttgcaaaagaatttggatggaaacagccattt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35764 ttgttgacaactttctcatttttccatgttgcaaaagaatttggatggaaacagccattt 35705
Query: 147 acgaagtcttgagatcatagaaactgagatgcgatgagatgagataggaaaacttatgaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35704 acgaagtcttgagatcatagaaactgagatgcgatgagatgagataggaaaacttatgaa 35645
Query: 207 aaatccgtagtaggtagcaccattcacttggtttgatagtatatataagactgctagtcc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35644 aaatccgtagtaggtagcaccattcacttggtttgatagtatatataagactgctagtcc 35585
Query: 267 gtacctgctgatcggatggttatgtagggtgggaggaagggagataaaaatgcaactata 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35584 gtacctgctgatcggatggttatgtagggtgggaggaagggagataaaaatgcaactata 35525
Query: 327 cactttattctttgatctgttcttccggatctgtatattgagatagatcgagatcgtctc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35524 cactttattctttgatctgttcttccggatctgtatattgagatagatcgagatcgtctc 35465
Query: 387 ttttttgtaggtaatggatcagtagcgatacaattccgctgcttatcgaagtagccatca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35464 ttttttgtaggtaatggatcagtagcgatacaattccgctgcttatcgaagtagccatca 35405
Query: 447 atgcgtagcatccattagtaaacttgggggccattgatgtggagtagaacagtagatacc 506
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 35404 atgcgtagcatccattagtaaacttgggggccattgatgtggagtagaacagtagagacc 35345
Query: 507 accaagcgttgaccgcaccagagaacatattcattgatgctaggacaatggctctttctt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35344 accaagcgttgaccgcaccagagaacatattcattgatgctaggacaatggctctttctt 35285
Query: 567 gaagatcaccacggcatacaacgttgcaccatgcaaagaagagagtttgaccagtgtaag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35284 gaagatcaccacggcatacaacgttgcaccatgcaaagaagagagtttgaccagtgtaag 35225
Query: 627 atattcctcccaagtattgagcagcgaacataaactttcggtttaatgggttcgtcaaga 686
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 35224 aaattcctcccaagtattgagcagcgaacataaacttcgggtttaatgggttcgtcaaga 35165
Query: 687 tcaatagagaaacaatgaacatggatatactgatgaaaagggcatcgtgccaatgcttgg 746
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 35164 tcaatagagaaacaatgaacatggatatactgatgaaaagggcaacgtgccaatgcttgg 35105
Query: 747 cgaaatgagagtatttatggacatataatgatgatgcccctgttaaaacgatccccactt 806
|||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||
Sbjct: 35104 cgaaatgagagtatttatggacatataatgatgatgccactgtagaaacgatcccaactg 35045
Query: 807 gctttattccgacagggaacctggtcttgtcagctagggaatacccttggttttcaagcc 866
| ||||||||||||||||||| ||||||||||||| ||||| |||||||| |||||||
Sbjct: 35044 catatattccgacagggaacctgttcttgtcagctagtgaataaccttggttatcaagcc 34985
Query: 867 ctattttgaaagtttgagttcgattcaaatgaaatgtt 904
|| ||||||| ||||||||||| |||||||||||||
Sbjct: 34984 agatgttgaaag-ttgagttcgatgcaaatgaaatgtt 34948
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6580
Number of Sequences: 1807
Number of extensions: 6580
Number of successful extensions: 238
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)