BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD05RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1059 1431 0.0
>3x_Contig1059
Length = 3822
Score = 1431 bits (722), Expect = 0.0
Identities = 813/837 (97%), Gaps = 5/837 (0%)
Strand = Plus / Minus
Query: 50 taatcagaaacgaaatggcctctgatgtctataccacggaattgcttgcagatatcatca 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 taatcagaaacgaaatggcctctgatgtctataccacggaattgcttgcagatatcatca 1145
Query: 110 ctgaacaatcaaatgacagatttggtgtcagaaccgctattccaggtcatgttcaacaag 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 ctgaacaatcaaatgacagatttggtgtcagaaccgctattccaggtcatgttcaacaag 1085
Query: 170 gtggtgtaccatcctccaaggatcgtgtcattgcatccagattcgctgtgaagtgtgtca 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 gtggtgtaccatcctccaaggatcgtgtcattgcatccagattcgctgtgaagtgtgtca 1025
Query: 230 agttcatcgaacaatggaataagaagaacaccgctgcagacaatgaggatttcaagatcc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 agttcatcgaacaatggaataagaagaacaccgctgcagacaatgaggatttcaagatcc 965
Query: 290 tacgattcaattacgtgaacggtgtgaagcaatacactgtccttgacgaagatctatctg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 tacgattcaattacgtgaacggtgtgaagcaatacactgtccttgacgaagatctatctg 905
Query: 350 ccgctgtgatttgtgtcaatggttccaagatttctttcaagccaatcgctcatatctggg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 ccgctgtgatttgtgtcaatggttccaagatttctttcaagccaatcgctcatatctggg 845
Query: 410 aaaacgaaaccaatatcgaactcagaaagggacaagaaattcactgggaagaatacaacg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 aaaacgaaaccaatatcgaactcagaaagggacaagaaattcactgggaagaatacaacg 785
Query: 470 agatcggagatattctttccggcagaagtatgctaagaagaaagatccaaaaggaacaac 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 agatcggagatattctttccggcagaagtatgctaagaagaaagatccaaaaggaacaac 725
Query: 530 aagaagaatcctctttaccaagtgtggcagacactccattgtcatctgtcacagtttcta 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aagaagaatcctctttaccaagtgtggcagacactccattgtcatctgtcacagtttcta 665
Query: 590 cctctgctgncaaagaagactcagccttgtatgtttaaaagactaaccctcttacctgtc 649
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cctctgctgcaaaagaagactcagccttgtatgtttaaaagactaaccctcttacctgtc 605
Query: 650 atgaaaagttctgaacattagaaagtcatcatatgccatgtataccgattctcgtttcat 709
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 604 atgaaaagttctgaacattagaagttcatcatatgccatgtataccgattctcgtttcat 545
Query: 710 atgtacaataatattttacgtaactaaacttatt-attatatcgatgaaagaacacccat 768
||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||
Sbjct: 544 atgtacaataatattttacgtaactaactttattaattatatcgatgaaggacaacccat 485
Query: 769 taggttaactaccc-cccttttttaccgaaaagtctttcaaga-tttcgtatcacgtgat 826
|||| |||||||| || | | |||||||||||||||||| || ||||||||||||||||
Sbjct: 484 aaggtaaactacccaccgtatattaccgaaaagtctttcaggattttcgtatcacgtgat 425
Query: 827 gcaactattttattgatttttc-aaactcccaatttcagtttgtcgtgaccttcctt 882
|||||||||||||||||||||| || ||| || |||||||||| ||||||| |||||
Sbjct: 424 gcaactattttattgatttttcgaatctcgcagtttcagtttg-cgtgaccatcctt 369
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7324
Number of Sequences: 1807
Number of extensions: 7324
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)