BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC37ZD06FM1.SCF screened BAC_end
         (941 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1686                                                         975   0.0  

>3x_Contig1686 
          Length = 15382

 Score =  975 bits (492), Expect = 0.0
 Identities = 511/517 (98%), Gaps = 1/517 (0%)
 Strand = Plus / Plus

                                                                       
Query: 255 agcttaagattcaaacgtgcaccagattccgtcgcattaaacgaattatatattgtagtc 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agcttaagattcaaacgtgcaccagattccgtcgcattaaacgaattatatattgtagtc 60

                                                                       
Query: 315 tttgattactacaaaagcaaactttcacctgacgagtacagagagttagtggtaaaatgt 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tttgattactacaaaagcaaactttcacctgacgagtacagagagttagtggtaaaatgt 120

                                                                       
Query: 375 tacaagtattattgtgatttcttgaaaaatcatgttaatacttatcttcaatggagaata 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tacaagtattattgtgatttcttgaaaaatcatgttaatacttatcttcaatggagaata 180

                                                                       
Query: 435 gacacaagcattttgagaactatgattcaccgcgccaaatttgatattaaggatgataga 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gacacaagcattttgagaactatgattcaccgcgccaaatttgatattaaggatgataga 240

                                                                       
Query: 495 cttgcatatgaaatgttaatgaatttttatgcaatgaatttgaatccaagatttgattct 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cttgcatatgaaatgttaatgaatttttatgcaatgaatttgaatccaagatttgattct 300

                                                                       
Query: 555 aaaaacactccatttggtcttgtcttgtaccggaatgatgcaataaatcaacaggaattt 614
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 301 aaaaacactccatttggtcttgtcttgtaccggaatgaggcaataaatcaacaggaattt 360

                                                                       
Query: 615 aatcaagtgcttgaattaatgcaaagatgtanggcaccaatggatcataaaattattatt 674
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 361 aatcaagtgcttgaattaatgcaaagatgtagggcaccaatggatcataaaattattatt 420

                                                                       
Query: 675 accatcgtcttgaaattcattaaatcangcaatatcgacttggcacatgaatggtatact 734
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 421 accatcgtcttgaaattcattaaatcaggcaatatcgacttggcacatgaatggtatact 480

                                                
Query: 735 cggntactt-agacaggatatccacttcgtcatttca 770
           ||| ||||| |||||||||||||||| ||||||||||
Sbjct: 481 cggttacttaagacaggatatccactccgtcatttca 517


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7122
Number of Sequences: 1807
Number of extensions: 7122
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)