BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD06RM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1210 1378 0.0
>3x_Contig1210
Length = 6392
Score = 1378 bits (695), Expect = 0.0
Identities = 824/857 (96%), Gaps = 8/857 (0%)
Strand = Plus / Minus
Query: 45 cttgaggtgaataaattgtgagacaaagaaaaaaaagtaagaagagaaaaagttgtaaaa 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5465 cttgaggtgaataaattgtgagacaaagaaaaaaaagtaagaagagaaaaagttgtaaaa 5406
Query: 105 cccttcagtaatactaaaagagtcatcaaagaaaccgtgtcctaccacgtcaatagtttc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5405 cccttcagtaatactaaaagagtcatcaaagaaaccgtgtcctaccacgtcaatagtttc 5346
Query: 165 ggttaacatctttaattaaaatgggaggttggtcataacaaatatcattatatcttggta 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5345 ggttaacatctttaattaaaatgggaggttggtcataacaaatatcattatatcttggta 5286
Query: 225 gattttcgatggaactttatcattcttctcgaacggaaggaactaaagagagtagtgtct 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5285 gattttcgatggaactttatcattcttctcgaacggaaggaactaaagagagtagtgtct 5226
Query: 285 gggcatgtttcaatgatatcgtatctctcagctaattacacttattgctttggttcacca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5225 gggcatgtttcaatgatatcgtatctctcagctaattacacttattgctttggttcacca 5166
Query: 345 ccttgttggttagaagcgtcgttcttgtacatttgttcgaacaacttcatggaagcggtt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5165 ccttgttggttagaagcgtcgttcttgtacatttgttcgaacaacttcatggaagcggtt 5106
Query: 405 tgtaattcttcagtcttggtcttcaactcttcagcgtcgacttcttcaccggcttgaact 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5105 tgtaattcttcagtcttggtcttcaactcttcagcgtcgacttcttcaccggcttgaact 5046
Query: 465 ctagcgaccaattctctcaaagcagcgacttggtccttaaccttttgagcttcagccttg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5045 ctagcgaccaattctctcaaagcagcgacttggtccttaaccttttgagcttcagccttg 4986
Query: 525 tccaatttttcttcgaattccttc-aagaagcttcggtatcgttggccaattggtcaccc 583
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4985 tccaatttttcttcgaattccttcaaagaagcttcggtatcgttggccaattggtcaccc 4926
Query: 584 ttgttggcagtttcaatagccttctttct-gtttcatcttgntctctgaac-tttcagca 641
|||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct: 4925 ttgttggcggtttcaatagccttctttctggtttcatcttgttctctgaacttttcagca 4866
Query: 642 tcgctaaccatttgctcgatttcagattcggacaaaccggaatgaacccagc-acagtga 700
|||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct: 4865 tcgctaaccatttgctcgatttcagattcggacaaaccggaa-gaa-ccagcaacagtga 4808
Query: 701 tgggagcattcctgttggaagccttgtctctagcanagacgttgatgattccatcggcat 760
||| ||||| | ||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 4807 tggaagcatccttgttggaagccttgtctctagcagagacgttgatgataccatcggcat 4748
Query: 761 c-atatcgaaaggaccttcgatttgt-ggacaccctttggagctgttgggataccgaaca 818
| |||||||||| | ||||||||||| |||||||||||||||||| ||||||||| |||
Sbjct: 4747 caatatcgaaagaaacttcgatttgtgggacaccctttggagctggtgggataccagaca 4688
Query: 819 aattgaatttaccgttcaccttggtgtctttgaccaattttcttttacccttggaaactt 878
|| |||| |||||| ||| |||| ||||| ||||||||| ||||| ||| | | |||||
Sbjct: 4687 aagtgaagttaccgatcaacttgttgtctctgaccaattctctttcaccttggaaaactc 4628
Query: 879 tgaattccacggaggtt 895
||| |||||||||||||
Sbjct: 4627 tgatttccacggaggtt 4611
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8847
Number of Sequences: 1807
Number of extensions: 8847
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)