BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD07RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1296 1310 0.0
>3x_Contig1296
Length = 7334
Score = 1310 bits (661), Expect = 0.0
Identities = 751/773 (97%), Gaps = 6/773 (0%)
Strand = Plus / Plus
Query: 47 tcaggattcatttcgtaacgatggttaaactcaatacacttctctaactgatcattaatg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4884 tcaggattcatttcgtaacgatggttaaactcaatacacttctctaactgatcattaatg 4943
Query: 107 gtctgaacccaaatctcttgtctggataaaagcaaattgcagaatctttctacaacaccg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4944 gtctgaacccaaatctcttgtctggataaaagcaaattgcagaatctttctacaacaccg 5003
Query: 167 acaagtattttagcttgacccgaaccagcagcgacttcaacttgttggttgaacatttgg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5004 acaagtattttagcttgacccgaaccagcagcgacttcaacttgttggttgaacatttgg 5063
Query: 227 aaacaagttttagtaccatcaagaaataaccaattatcggagtcaacatgtggtggagaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5064 aaacaagttttagtaccatcaagaaataaccaattatcggagtcaacatgtggtggagaa 5123
Query: 287 cttctttcagtgaagataacgacttcagttttctcaagattaccaatccattctctcatc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5124 cttctttcagtgaagataacgacttcagttttctcaagattaccaatccattctctcatc 5183
Query: 347 ttgttcaaaatcaatgttagatagtcggagagtagttgctccttctcagagtcaccgata 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5184 ttgttcaaaatcaatgttagatagtcggagagtagttgctccttctcagagtcaccgata 5243
Query: 407 atactctttattctatccttgttaaatccgaattctttctttaagactgattggaagttt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5244 atactctttattctatccttgttaaatccgaattctttctttaagactgattggaagttt 5303
Query: 467 ttatcgaactccaaaatatctaagataattatggtttctggttcagaatccacaagctcg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5304 ttatcgaactccaaaatatctaagataattatggtttctggttcagaatccacaagctcg 5363
Query: 527 gtaatcaatttgtgaatctcatcataataaaactcgaagtatctttcgaaaagtttccaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5364 gtaatcaatttgtgaatctcatcataataaaactcgaagtatctttcgaaaagtttccaa 5423
Query: 587 tgagcaggtcctaatggagtgacatggtctcgaacgaccattaattcattataaacccaa 646
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5424 tgagcaggtcctaatggagtgacatggtctcgaacgaccattaattcattaaaaacccaa 5483
Query: 647 tccaaagttgttttaaacatcggaatttcttgtcaccactggatttcatttcttacttca 706
||| ||||||||| ||||||| ||||||||||||||||||| | ||||||||||||||||
Sbjct: 5484 tcc-aagttgtttaaaacatc-gaatttcttgtcaccactgta-ttcatttcttacttca 5540
Query: 707 gtgaacatttttttgaataccttttgtgatttgtactttaaaagaaagtttattagccac 766
||||||| ||| ||| ||||| ||||||| |||||||| |||||||||||| |||||||
Sbjct: 5541 gtgaaca-tttcttggatacc-tttgtgaattgtacttaaaaagaaagttttatagccac 5598
Query: 767 gcggtaaaatcccggtctgaatagttcccttggttaatttcggttgcaatgcc 819
|||||| | ||| |||||||||||| |||| ||||||||| ||||| |||||
Sbjct: 5599 gcggtagagtccgtgtctgaatagtt-cctttgttaatttctgttgctatgcc 5650
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8523
Number of Sequences: 1807
Number of extensions: 8523
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)