BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD08FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1648 1215 0.0
>3x_Contig1648
Length = 16375
Score = 1215 bits (613), Expect = 0.0
Identities = 705/731 (96%), Gaps = 5/731 (0%)
Strand = Plus / Minus
Query: 89 tgattctatcctcaagggcaatcttcacgatgttcgatactttattgcagatgaaatttt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8467 tgattctatcctcaagggcaatcttcacgatgttcgatactttattgcagatgaaatttt 8408
Query: 149 cgaatgatataaagctaatcttttcaacgggaccgaacttggacagtagtaaattgatgg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8407 cgaatgatataaagctaatcttttcaacgggaccgaacttggacagtagtaaattgatgg 8348
Query: 209 atgggatatctaaatcatagtaagcatcatatttcactgtcttgatcttgtttaagttag 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8347 atgggatatctaaatcatagtaagcatcatatttcactgtcttgatcttgtttaagttag 8288
Query: 269 ttaagaacatgttttcgaactgatctctgacgacgtcattcaacatcaataaactttctt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8287 ttaagaacatgttttcgaactgatctctgacgacgtcattcaacatcaataaactttctt 8228
Query: 329 gcgcgtagatctttagcatttgatagctgttaacagacattttactcagtatgttaactt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8227 gcgcgtagatctttagcatttgatagctgttaacagacattttactcagtatgttaactt 8168
Query: 389 tggtggttttatcaaagattgtaggtgtttggaaaccttcttcaacgtattttgaggaag 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8167 tggtggttttatcaaagattgtaggtgtttggaaaccttcttcaacgtattttgaggaag 8108
Query: 449 tgacagttgcagtagtgctatagtcggaatagaattgtaagtacccatcagtacaaagat 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8107 tgacagttgcagtagtgctatagtcggaatagaattgtaagtacccatcagtacaaagat 8048
Query: 509 ccattgtggccaaatatttgattacacctttgaataattggtaagatgagaacccatgca 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8047 ccattgtggccaaatatttgattacacctttgaataattggtaagatgagaacccatgca 7988
Query: 569 atataattctgttaccattcaacccaccaccatttagtagggctgccatcaacgtggcaa 628
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7987 ataaaattctgttaccattcaacccaccaccatttagtagggctgccatcaacgtggcaa 7928
Query: 629 acttgaattttc--aaaccaccccacgcatctgaatgagacatatttgatgagaagcctc 686
||| ||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 7927 actcgaaatttccaaaaccacccaacgcatctgaatgagacatatttgatgagaagcctc 7868
Query: 687 tctgagataaccattagcttcccc-aaatacaagcctgttaaaac-gntctgtttgtttc 744
||||||||||||| |||||||||| ||||||||||||||| |||| | ||||||||||||
Sbjct: 7867 tctgagataacca-tagcttccccaaaatacaagcctgtttaaactgttctgtttgtttc 7809
Query: 745 ttggaattggggaagtacttcaattagggttccggaacaggagatgatattacccagaaa 804
|| || ||| | ||||||||||| ||| |||| || || |||||||| |||| |||||
Sbjct: 7808 tttgatttgtgtaagtacttcaaatagtgttcgtgacaagaagatgataataccgagaaa 7749
Query: 805 tggtaaaaagg 815
| ||| |||||
Sbjct: 7748 ttgtagaaagg 7738
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7516
Number of Sequences: 1807
Number of extensions: 7516
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)