BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD08RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1637 1084 0.0
>3x_Contig1637
Length = 14855
Score = 1084 bits (547), Expect = 0.0
Identities = 633/651 (97%), Gaps = 8/651 (1%)
Strand = Plus / Minus
Query: 47 ttgcaccagttttttcttttcttctctggccgtcttaagaccttcgtacaccgcctcgtt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3524 ttgcaccagttttttcttttcttctctggccgtcttaagaccttcgtacaccgcctcgtt 3465
Query: 107 acgcaatatttcataactatgtgccgctactcgtaggccttcgacgattttctttgaacc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3464 acgcaatatttcataactatgtgccgctactcgtaggccttcgacgattttctttgaacc 3405
Query: 167 ttcttcaaacttattattcttcttattaaccaattgaattaccaacttgtcatagaaatc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3404 ttcttcaaacttattattcttcttattaaccaattgaattaccaacttgtcatagaaatc 3345
Query: 227 ttgttcaaatccttttaatgcttcaaagtttttggatgtaatctcagtgacagttggaag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3344 ttgttcaaatccttttaatgcttcaaagtttttggatgtaatctcagtgacagttggaag 3285
Query: 287 agagtttatagtgagccaatccaagatgaagtccaaatttctggtttcagttgttgaata 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3284 agagtttatagtgagccaatccaagatgaagtccaaatttctggtttcagttgttgaata 3225
Query: 347 tccagggaatatgatcggagtaaacgtagatttcttgaatatgaagaacgttggtgattg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3224 tccagggaatatgatcggagtaaacgtagatttcttgaatatgaagaacgttggtgattg 3165
Query: 407 ggtaatggatgtcgtgataaaatggtcctcattaatttcagtgcgttgatcggtattata 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3164 ggtaatggatgtcgtgataaaatggtcctcattaatttcagtgcgttgatcggtattata 3105
Query: 467 atctttgtacagagtttgatagagagtatggcttaacttc-ttaggtcgtcagtgttctt 525
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3104 atctttgtacagagtttgatagagagtatggcttaacttctttaggtcgtcagtgttctt 3045
Query: 526 gttcaggtaaat-ttagggatgtatccc-atgggtcaatgagttgttcc-aaaattgcat 582
|| || |||||| ||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 3044 gtacaagtaaatattagggatgtatcccaatgggtcaatgagttgttccaaaaattgcat 2985
Query: 583 atcctcaggaac-acagttttcgggttttaattaattac-agc-attttttattcgtttc 639
||||||||| || ||||||| |||||| ||||||| ||| ||| || |||||| | |||
Sbjct: 2984 atcctcagggacaacagtttccgggttataattaaatacaagcaatattttatcggcttc 2925
Query: 640 ggcatttgcttccaaaatgtcacttttttggttcttttacaaaagcttcga 690
||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2924 ggcatttgcttccaaaatgtcac-tttttggttcttttacaaaagcttcga 2875
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8527
Number of Sequences: 1807
Number of extensions: 8527
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)