BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD09FM1.SCF screened BAC_end
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1411 1489 0.0
>3x_Contig1411
Length = 7271
Score = 1489 bits (751), Expect = 0.0
Identities = 788/799 (98%), Gaps = 1/799 (0%)
Strand = Plus / Plus
Query: 84 cttcgatatatacaacgtacatccgttgaaacgtatcatgagtcaagagatgcccgatgc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5377 cttcgatatatacaacgtacatccgttgaaacgtatcatgagtcaagagatgcccgatgc 5436
Query: 144 tggtaccatcagaatgttgcatcgcacaaactacattgcatttgttagtacaaagaaaga 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5437 tggtaccatcagaatgttgcatcgcacaaactacattgcatttgttagtacaaagaaaga 5496
Query: 204 gttacttcatatttgggatgacgttaagaaacaagatatcacaagagttaagctcgatgc 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5497 gttacttcatatttgggatgacgttaagaaacaagatatcacaagagttaagctcgatgc 5556
Query: 264 tgctgttaaggacttgtttctttcaagggagtttatagtagtatcacagggcgatgtgat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5557 tgctgttaaggacttgtttctttcaagggagtttatagtagtatcacagggcgatgtgat 5616
Query: 324 atccattttcaagtttggtaacccctggaataagattactgaagacattaagttcggagg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5617 atccattttcaagtttggtaacccctggaataagattactgaagacattaagttcggagg 5676
Query: 384 agtgtgcgagtttgccaatggattgttggtgtactccaatgagttcaatctgggtcagat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5677 agtgtgcgagtttgccaatggattgttggtgtactccaatgagttcaatctgggtcagat 5736
Query: 444 ccacgtaactagattgcagaccgatgcagagcaggttgttggaaaaggtgtcctagtgaa 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5737 ccacgtaactagattgcagaccgatgcagagcaggttgttggaaaaggtgtcctagtgaa 5796
Query: 504 ggcccatgccaatccagtgaaaatggtaagattaaataggaaaggagacatggttgccac 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5797 ggcccatgccaatccagtgaaaatggtaagattaaataggaaaggagacatggttgccac 5856
Query: 564 ttgttcgcatgatggaacgctaattagagtttttcaaacggacaatggagtcttggttcg 623
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5857 ttgttcgcaggatggaacgctaattagagttttccaaacggacaatggagtcttggttcg 5916
Query: 624 agagtttagaagatgactggacagaactagtattatagatatgcgttggtcaccagatgg 683
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5917 agagtttagaagaggactggacagaactagtattatagatatgcgttggtcaccagatgg 5976
Query: 684 atcataattagctgttgtcagtgacaaatggacgttacacgtttttgaagtgttcaatga 743
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5977 atcaaaattagctgttgtcagtgacaaatggacgttacacgtttttgaagtgttcaatga 6036
Query: 744 cgccgagaacaagagacacgtacttagggattggatcaatataaagtacttccaaagcga 803
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6037 cgccgagaacaagagacacgtacttaaggattggatcaatataaagtacttccaaagcga 6096
Query: 804 gtggagcatttgcaattttaatttgaaggtcagtaaaggatccaatgactgcaaaatcng 863
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
Sbjct: 6097 gtggagcatttgcaattttaaattgaaggtcagtaaaggctccaatgactgcaaaatc-g 6155
Query: 864 catggttttcagattcagg 882
||||| | |||||| ||||
Sbjct: 6156 catggatatcagatacagg 6174
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6266
Number of Sequences: 1807
Number of extensions: 6266
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)