BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD10FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1505 1485 0.0
>3x_Contig1505
Length = 10303
Score = 1485 bits (749), Expect = 0.0
Identities = 815/833 (97%), Gaps = 3/833 (0%)
Strand = Plus / Minus
Query: 86 ctaaaagtatgtgcctcatgcatcgagcaattacgtccctatgtaacccaggctgtgacc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 ctaaaagtatgtgcctcatgcatcgagcaattacgtccctatgtaacccaggctgtgacc 1080
Query: 146 gcaccaagttccttgaagcttgatggaaaagtccaaagacttatctatttatgtactggg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 gcaccaagttccttgaagcttgatggaaaagtccaaagacttatctatttatgtactggg 1020
Query: 206 tttgctcgcatgtgtcattttaaggaaaacgaaaaaaggttagaatttctcagaggtgac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 tttgctcgcatgtgtcattttaaggaaaacgaaaaaaggttagaatttctcagaggtgac 960
Query: 266 gaacacttgtaccagtacgttacaaagtgccttcttacgttcacaaataagaaactagcc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 gaacacttgtaccagtacgttacaaagtgccttcttacgttcacaaataagaaactagcc 900
Query: 326 actcctctgagaaaaattgcgatcaagaacctagtgaaattggcgtcatcttttcccaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 actcctctgagaaaaattgcgatcaagaacctagtgaaattggcgtcatcttttcccaaa 840
Query: 386 ctcttcaactctccacctgttctaaaagttttagatcatgagttcgaagctggtgtccta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 ctcttcaactctccacctgttctaaaagttttagatcatgagttcgaagctggtgtccta 780
Query: 446 gacactaaactgacaatcattgactgtttacaagtgttcttctctagtgaggaaaagaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gacactaaactgacaatcattgactgtttacaagtgttcttctctagtgaggaaaagaaa 720
Query: 506 gtattaatgaaaataggggcgaacggtaccatatcatcaagttcagagatgaggagattg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gtattaatgaaaataggggcgaacggtaccatatcatcaagttcagagatgaggagattg 660
Query: 566 atatcaacacaaaacactaccgagtctgtcaatgatggcgtctgttcagcattagttacc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 atatcaacacaaaacactaccgagtctgtcaatgatggcgtctgttcagcattagttacc 600
Query: 626 agataccttgacagcatcatggatttatgtttgctatcggatataaaagatgctattgtt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 agataccttgacagcatcatggatttatgtttgctatcggatataaaagatgctattgtt 540
Query: 686 gccatcaaatttctacagctcacattgaattttcactataccaaatcgtcacatgctgtt 745
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 539 gccatcaaatttctacagctcacattgaattttcactataccaatccgtcacatgctgtt 480
Query: 746 cctacacttattgctctttcatgttcagacgcgaactcagtaaaaacagtgtccaccaga 805
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 479 cctacacttattgctctttcatgttcagacgcgaactcagtaaaaacagtgtcgaccaga 420
Query: 806 ctgttgtccacgatttttgaacagtatgagaattttggtatttaacgggcttgccgctta 865
||||||||||||||||||||||||||||||| | | |||||||||||| |||||||||
Sbjct: 419 ctgttgtccacgatttttgaacagtatgagagtat-ggtatttaacggtcttgccgctgg 361
Query: 866 atttaaaaaagggctgggttgggtttacagaccctgctcccattagagttgga 918
||||||||| | |||| |||| || | ||| ||||||||||| |||||||||
Sbjct: 360 atttaaaaa-gtgctgtgttgttttca-agagcctgctcccatcagagttgga 310
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5747
Number of Sequences: 1807
Number of extensions: 5747
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)