BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD10RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1755 1390 0.0
>3x_Contig1755
Length = 22936
Score = 1390 bits (701), Expect = 0.0
Identities = 758/773 (98%), Gaps = 3/773 (0%)
Strand = Plus / Minus
Query: 44 gcttctaaagaaaccaataaacattgtcagcgcaacttcctagcttactgttggattttg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11294 gcttctaaagaaaccaataaacattgtcagcgcaacttcctagcttactgttggattttg 11235
Query: 104 agggggttaaggttttataaaaattttgcagagaatgccaatcctttctagatatctatc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11234 agggggttaaggttttataaaaattttgcagagaatgccaatcctttctagatatctatc 11175
Query: 164 ggtggtaggagtagatcgcgacgtattcataaatgtgagaggtaattcagtgtcactact 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11174 ggtggtaggagtagatcgcgacgtattcataaatgtgagaggtaattcagtgtcactact 11115
Query: 224 cactattggattctatgttatggaatggatgctatatattcttttgtttgtttttgccca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11114 cactattggattctatgttatggaatggatgctatatattcttttgtttgtttttgccca 11055
Query: 284 gctttttaggcgtttaatacacccgcgcttctctgacttcagcctaattgatccacaaat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11054 gctttttaggcgtttaatacacccgcgcttctctgacttcagcctaattgatccacaaat 10995
Query: 344 ttctcatatgacttactcccaaagggagttgttattcccaagaatgtttgtattaatgct 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10994 ttctcatatgacttactcccaaagggagttgttattcccaagaatgtttgtattaatgct 10935
Query: 404 tacaggcggtataacattcttgagcgggggtactattaacgctttgagcccccgatattc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10934 tacaggcggtataacattcttgagcgggggtactattaacgctttgagcccccgatattc 10875
Query: 464 tgtgacaagaaaatggtggaacacgcactccacgatgttaaccattttgggcacaaacgc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10874 tgtgacaagaaaatggtggaacacgcactccacgatgttaaccattttgggcacaaacgc 10815
Query: 524 tgtacaaagtactgtagtttcggtgttgaaaaacatcgcaggtaagacaagaccagatct 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10814 tgtacaaagtactgtagtttcggtgttgaaaaacatcgcaggtaagacaagaccagatct 10755
Query: 584 tatgatcagatgtatgcctgttat-aaagacattgctccaggccagttcaatatcgacat 642
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 10754 tatgacaagatgtatgcctgttataaaagacattgctccaggccagttcaatatcgacat 10695
Query: 643 tcggtcgtgttctaccgataatttacgtgtcttggctgatggctttagaagctttcccag 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10694 tcggtcgtgttctaccgataatttacgtgtcttggctgatggctttagaagctttcccag 10635
Query: 703 tgggacggcagcaaacggctttttccaatttgacatttataactttcatgattctatctt 762
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 10634 tgggacggcagc-aacggctttttccaatttgacattattaactttcatgattctatctc 10576
Query: 763 gagtg-attttttccaacatgccacttttttcaactcaattactttacccttg 814
||||| || | | ||||||||| |||| || |||||||||||||||||||||
Sbjct: 10575 gagtgaatatctaccaacatgctacttcttcaaactcaattactttacccttg 10523
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6319
Number of Sequences: 1807
Number of extensions: 6319
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)