BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD11FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1560 0.0
>3x_Contig1807
Length = 66587
Score = 1560 bits (787), Expect = 0.0
Identities = 824/834 (98%), Gaps = 2/834 (0%)
Strand = Plus / Plus
Query: 85 aaacttccaaatctttaaatgtgccataacgtaataagaccaaatttttatgccgcggtc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31476 aaacttccaaatctttaaatgtgccataacgtaataagaccaaatttttatgccgcggtc 31535
Query: 145 attctattattgtcatatcgatctatgcaactgtctttatcttgtcttgatcaactgtcc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31536 attctattattgtcatatcgatctatgcaactgtctttatcttgtcttgatcaactgtcc 31595
Query: 205 tgtaaattccatttatgcagtgcactttgtggggaatgtggggaacggttattctgcgca 264
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31596 tgtaaattccagttatgcagtgcactttgtggggaatgtggggaacggttattctgcgca 31655
Query: 265 ttcatatagaatctctggaatctgtgaaatgctcggacttttcgaagtttcgaagcttcg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31656 ttcatatagaatctctggaatctgtgaaatgctcggacttttcgaagtttcgaagcttcg 31715
Query: 325 gaatttcggaatttcggaattcgagccattatagtcaaaagaaacagaataataaaaaag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31716 gaatttcggaatttcggaattcgagccattatagtcaaaagaaacagaataataaaaaag 31775
Query: 385 ccactgacattatttttatctgttgtgccttctgtacaacaggaagatgacaaaataaga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31776 ccactgacattatttttatctgttgtgccttctgtacaacaggaagatgacaaaataaga 31835
Query: 445 gtttaagtgctaacaatggtttactaacggcgtaaaaggtattgacaaacggaagaaaca 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31836 gtttaagtgctaacaatggtttactaacggcgtaaaaggtattgacaaacggaagaaaca 31895
Query: 505 atgaaagttaggaatcatttactcaggttggtactgacataaaattctctttagaggaac 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31896 atgaaagttaggaatcatttactcaggttggtactgacataaaattctctttagaggaac 31955
Query: 565 agcgataattgctcatcttcattattggagatttttcctagatacgattttcttttgtgg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31956 agcgataattgctcatcttcattattggagatttttcctagatacgattttcttttgtgg 32015
Query: 625 caaacctcgaattgaagggtctagttggactaagatcaccagataatctgctaccacgtc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32016 caaacctcgaattgaagggtctagttggactaagatcaccagataatctgctaccacgtc 32075
Query: 685 tgttgcctttgcctcgcaatttgaaattgccttacgcccgatgccatccctttaacgttt 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32076 tgttgcctttgcctcgcaatttgaaattgccttacgcccgatgccatccctttaacgttt 32135
Query: 745 gagtttctgagtgatgcgatgccaaaagtgcctctagaattttttcagnaacctttgtgt 804
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 32136 gagtttctgagtgatgcgatgccaaaagtgcctctagaattttttcagaaacctttgtgt 32195
Query: 805 attttcgggaacgttttcatggtaaagacacactggac-atatcaatagaaagcatgcca 863
||||||||||||||||||||||||| ||||||||||| | |||||||||| ||||||||
Sbjct: 32196 attttcgggaacgttttcatggtaagaacacactggacaaaatcaatagaaggcatgcca 32255
Query: 864 gtataacatatgccgtaatggacattttggctttttcaagttttctttctcttt 917
||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 32256 gtataacatatgcggtaatggacattttgtctttttc-agttttctttctcttt 32308
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6534
Number of Sequences: 1807
Number of extensions: 6534
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)