BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD11RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 1600 0.0
>3x_Contig1781
Length = 20717
Score = 1600 bits (807), Expect = 0.0
Identities = 861/875 (98%), Gaps = 4/875 (0%)
Strand = Plus / Minus
Query: 48 aacgtccaagg-ctcatcttcgttaggaccgaagatatgtgggaaaaattctggaactaa 106
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15706 aacgtccaagggctcatcttcgttaggaccgaagatatgtgggaaaaattctggaactaa 15647
Query: 107 tctaccaagatacaagttcgcatccgtaatggtcaatgggcctcctttacggtaacatgc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15646 tctaccaagatacaagttcgcatccgtaatggtcaatgggcctcctttacggtaacatgc 15587
Query: 167 aggacccagatgcgctgtagctgattcagggcccactttgaaaagaccattgctccaaaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15586 aggacccagatgcgctgtagctgattcagggcccactttgaaaagaccattgctccaaaa 15527
Query: 227 taatctggaagatccacctgcagcaactgtattgatgtctagttgtggagtttgaatcac 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15526 taatctggaagatccacctgcagcaactgtattgatgtctagttgtggagtttgaatcac 15467
Query: 287 gattccagcagtggtggtttcgaacacatgttccaagataccattaccatacctgctgac 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15466 gattccagcagtggtggtttcgaacacatgttccaagataccattaccatacctgctgac 15407
Query: 347 atctgtagatgttccacccatatcaaacccgattaatgggatcttgttctctggattgta 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15406 atctgtagatgttccacccatatcaaacccgattaatgggatcttgttctctggattgta 15347
Query: 407 acatgtcgcagaatatcccaccacaccgcctgcaggtcccgagagaatggcccttaaacc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15346 acatgtcgcagaatatcccaccacaccgcctgcaggtcccgagagaatggcccttaaacc 15287
Query: 467 tgaaaatttatgtgcatcaacaagaccaccatctgattgcataaattgaatactagtgtc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15286 tgaaaatttatgtgcatcaacaagaccaccatctgattgcataaattgaatactagtgtc 15227
Query: 527 ttctgctttgtccaaacctgactcaattccttcgaggtacgattcgatcactggagtcaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15226 ttctgctttgtccaaacctgactcaattccttcgaggtacgattcgatcactggagtcaa 15167
Query: 587 gtaagaatcagcaacggctgaatttgccctcggaatatacttgatcataggcgataattc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15166 gtaagaatcagcaacggctgaatttgccctcggaatatacttgatcataggcgataattc 15107
Query: 647 agaagataaggaaacatgagtgaaaccaatctctttagcgatcttataaaccttntgttc 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 15106 agaagataaggaaacatgagtgaaaccaatctctttagcgatcttataaaccttttgttc 15047
Query: 707 atgttcttggtatgtatatgaatgtaaaaaggcaacggccaatgatctaaatcccgtagc 766
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 15046 atgttcttggtatgtatatgaatgtaaaaaggcaacggccaatgatctaatcccggtagc 14987
Query: 767 atancaaatgttcanagtagttcgaacttcttcttcattaattctttgc-acactctaaa 825
||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 14986 atacaaaatgttcaaagtagttcgaacttcttcttcattaattctttgcaacactct-aa 14928
Query: 826 cag-ttcttcagacttgcctaacacgagatcatcttctgatttnggccgagtcctcttac 884
||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 14927 cagtttctccagacttgcctaacacgagatcatcttctgattccggccgagtcctcttac 14868
Query: 885 cctttggatcttgagcataatctgctagcgttact 919
|||||||||||||||||||||||||||||||||||
Sbjct: 14867 cctttggatcttgagcataatctgctagcgttact 14833
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5409
Number of Sequences: 1807
Number of extensions: 5409
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)