BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZD12RM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1720 1467 0.0
>3x_Contig1720
Length = 19870
Score = 1467 bits (740), Expect = 0.0
Identities = 874/907 (96%), Gaps = 9/907 (0%)
Strand = Plus / Minus
Query: 52 ggcaaacgattttgcttgtgcgatatgagtcaacttttgcttcaagaaacgcacattatg 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19870 ggcaaacgattttgcttgtgcgatatgagtcaacttttgcttcaagaaacgcacattatg 19811
Query: 112 cttctgtttcaagaagttagccaagtttactatgaatactggacaattgaagttccatga 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19810 cttctgtttcaagaagttagccaagtttactatgaatactggacaattgaagttccatga 19751
Query: 172 gttgaaagcgataccaaattgggctccc-tcaggtttgaattttgcaagttcttccttcg 230
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 19750 gttgaaagcgataccaaattgggctcccctcaggtttgaattttgcaagttcttccttcg 19691
Query: 231 ataggaccttatactcttcc-aaatattggctcaaggaattaatcttggccttgggaggc 289
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 19690 ataggaccttatactcttcccaaatattggctcaaggaattaatcttggccttgggaggc 19631
Query: 290 tggtaatcccataattccgtggatggtctgcgagctaatcctaaccactctgcatcttta 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19630 tggtaatcccataattccgtggatggtctgcgagctaatcctaaccactctgcatcttta 19571
Query: 350 cccttgtagaaatccagtaatttttcacttaaagtaggtaaattctcatacgtgaaccta 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19570 cccttgtagaaatccagtaatttttcacttaaagtaggtaaattctcatacgtgaaccta 19511
Query: 410 tcataccacatgacgtttttatcatcaggtgaaatacaagaccaaacaccacctgcccat 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19510 tcataccacatgacgtttttatcatcaggtgaaatacaagaccaaacaccacctgcccat 19451
Query: 470 ggactagtataaccagtgggtgactggtcacctggtaagtaatctgccacaatgcagata 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19450 ggactagtataaccagtgggtgactggtcacctggtaagtaatctgccacaatgcagata 19391
Query: 530 ttttcacccggaacgccgtacaattcggtcaaacagtacgtgacgtacaaaccatatata 589
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 19390 ttttcacccggaacgccgtacaattcggtcaaacagtacgtgacgtacaaaccagaaata 19331
Query: 590 cctgcaccaacaacagtgatcaatggctgagatttgttagacatgtcatttgataatttc 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19330 cctgcaccaacaacagtgatcaatggctgagatttgttagacatgtcatttgataatttc 19271
Query: 650 aagctcaaataaagcttactgatgaaattgtgactttcaccgctatagatatattcagta 709
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19270 aggctcaaataaagcttactgatgaaattgtgactttcaccgctatagatatattcagta 19211
Query: 710 gatgttntactctactatagaaactgggaatgcttcaagt-agtgatctgccaattggct 768
|||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 19210 gatgttttactctactatagaaactgggaatgc-tcaagtaagtgatctgccaattggct 19152
Query: 769 gtttcctacttcaaactg-aactaggttgg-aaactttactgtagaaagagaatctcatt 826
|||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |
Sbjct: 19151 gtttcctacttcaaactgaaactaggttggaaaactttactgaggaaagagaatctcaat 19092
Query: 827 cccatgtcccttcacttttgtttgttatcgatgacaatacatgccttttttgacaaacgc 886
||||||||||||||||| ||| ||||| ||||||||| |||| || || ||||||||||
Sbjct: 19091 cccatgtcccttcacttatgtatgttaccgatgacaaaccatg-ctattctgacaaacgc 19033
Query: 887 ggctgccttgaccccaccttttttatatttaccttccgcctca-ttacagtcaagttatg 945
||||||| |||||||||| | ||| || | ||||| |||| |||||||||||| |||
Sbjct: 19032 -gctgcctcgaccccacctatcttagatatcacttccagctcatttacagtcaagtcatg 18974
Query: 946 ttgcctt 952
|||||||
Sbjct: 18973 ttgcctt 18967
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6648
Number of Sequences: 1807
Number of extensions: 6648
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)