BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZE01FM1.SCF screened BAC_end
(872 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig986 575 e-164
3x_Contig1553 472 e-133
>3x_Contig986
Length = 3440
Score = 575 bits (290), Expect = e-164
Identities = 360/382 (94%), Gaps = 1/382 (0%)
Strand = Plus / Plus
Query: 492 cttctgaaaaagcgcccgactcagttataggaagtatgccagttgaagctcaaccttctg 551
||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||
Sbjct: 5 cttctgaaaaagcgcccgactcagttataagaagtaagccagatgaagctcaaccttctg 64
Query: 552 tgattaatgatcccgttgaagaattatttggcaatgacgacacggtacaaacggagggac 611
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 65 tgattaatgatcccgttgaagatttatttggcaatgacgacacggtacaaacggagagaa 124
Query: 612 tgccttggcaagatcagataatagccgaagaattgcccagtatttctgcagaggtcggtc 671
|||||| | || ||||||||||||||||||||||||||| ||| |||||||| |||||
Sbjct: 125 tgccttagaaaagtcagataatagccgaagaattgcccagaattactgcagagaacggtc 184
Query: 672 gggaactgccacaacaggaaagtattaatgattacgatcagcaagaacaattccctcctt 731
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gagaactgcaacaacaggaaagtattaatgattacgatcagcaagaacaattccctcctt 244
Query: 732 tacttcacgatgaataggatacagtacaattggatcagtccgagagagaagtagctacta 791
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tacttcacgatgaaaagaatacagtacaattggatcagtccgagagagaagtagctacta 304
Query: 792 ttgaaaactttattgagccattatccccagtgaatgacggcagaaaa-caccgaacatgg 850
|||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 305 ttgaaaactttaatgagccattatcccaggtgaatgacggcagaaaagcaccgaacatgg 364
Query: 851 tgacacttgatgctcttctaga 872
||||||||||||||||||||||
Sbjct: 365 tgacacttgatgctcttctaga 386
>3x_Contig1553
Length = 8593
Score = 472 bits (238), Expect = e-133
Identities = 241/242 (99%)
Strand = Plus / Minus
Query: 86 aagctaaagcagaaaaggctacatgcttctaatggctcggcagatgaatctgcgattgta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aagctaaagcagaaaaggctacatgcttctaatggctcggcagatgaatctgcgattgta 183
Query: 146 ccgcagaccacagatgttcatttagagtcttctgccgaggcaattggctctgtaaggtcg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ccgcagaccacagatgttcatttagagtcttctgccgaggcaattggctctgtaaggtcg 123
Query: 206 gttaatgcacaagtatcgccgcagtcagaggcttcacaagcagatacaccgcaattggtt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gttaatgcacaagtatcgccgcagtcagaggcttcacaagcagatacaccgcaattggtt 63
Query: 266 catactgaagccattccagacgctgtaccagagcacaacgatttatctgacttgttccaa 325
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 62 catactgaagccattccagacgctgtaccagagcaccacgatttatctgacttgttccaa 3
Query: 326 ca 327
||
Sbjct: 2 ca 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4593
Number of Sequences: 1807
Number of extensions: 4593
Number of successful extensions: 18
Number of sequences better than 1.0e-20: 2
length of query: 872
length of database: 10,358,551
effective HSP length: 16
effective length of query: 856
effective length of database: 10,329,639
effective search space: 8842170984
effective search space used: 8842170984
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)