BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZE01RM1.SCF screened BAC_end
(887 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 1277 0.0
3x_Contig38 747 0.0
>3x_Contig1517
Length = 8289
Score = 1277 bits (644), Expect = 0.0
Identities = 748/771 (97%), Gaps = 9/771 (1%)
Strand = Plus / Minus
Query: 51 gtgatagaaat-ataaactttttcttataacgttgttgaagtaaaccaagttgctgtgaa 109
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5350 gtgatagaaatcataaactttttcttataacgttgttgaagtaaaccaagttgctgtgaa 5291
Query: 110 ctaaatgtttcagtatgaaaaagacattcgaaacccttaattatgaagaagatcaaatac 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5290 ctaaatgtttcagtatgaaaaagacattcgaaacccttaattatgaagaagatcaaatac 5231
Query: 170 atatctcttagaagaaacaaaagaaaaaaagcatattaaaggcaatattgaaggctcgat 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5230 atatctcttagaagaaacaaaagaaaaaaagcatattaaaggcaatattgaaggctcgat 5171
Query: 230 caagagatatctaacaagaaaaagataaccagtacctgtagtatcagcttcatctacgaa 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5170 caagagatatctaacaagaaaaagataaccagtacctgtagtatcagcttcatctacgaa 5111
Query: 290 actttcttaacgggtgaatttacaaacatttctaatgatcttcattttaagcttccagaa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5110 actttcttaacgggtgaatttacaaacatttctaatgatcttcattttaagcttccagaa 5051
Query: 350 agttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaagtagca 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5050 agttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaagtagca 4991
Query: 410 gcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagctatacaa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4990 gcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagctatacaa 4931
Query: 470 tgtcatcaggcttcaagatgaagaggtcaaggagtcctgacccgataggaatcgataact 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4930 tgtcatcaggcttcaagatgaagaggtcaaggagtcctgacccgataggaatcgataact 4871
Query: 530 ataagatacaacggctaatatatgatttcgaaaacctatcgttggctcctaggggaaccg 589
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4870 ataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggggaaccg 4811
Query: 590 atggggatanag-aacataaaattgattcagggttgaactcattcaaagcagttgtaaat 648
|| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4810 at-gggataaagaaacataaaattgattcagggttgaactcattcaaagcagttgtaaat 4752
Query: 649 aaaaagatgtggggatgtagttgaacgcgaattgagtggttcaaacaaaaatgataagat 708
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4751 aaaaggatgt-gggatgtagttgaacgcgaattgagtggttcaaacaaaaatgataagat 4693
Query: 709 atatgaaagatttttcgatcatgtaccgaagttttaactcgcaggtaattaaaaggtatg 768
|||||||||| | |||||||||||| ||| ||||||||||||||||| ||| ||||||
Sbjct: 4692 atatgaaagaatattcgatcatgta-cgacagtttaactcgcaggtaataaaatggtatg 4634
Query: 769 accgggcgatcttgtggtaaccaggcttgtggggtaaaaaggtaccaacag 819
| | ||||||| |||||| | || |||||| |||||||| |||||||||||
Sbjct: 4633 a-ctggcgatc-tgtggt-agcaagcttgt-gggtaaaatggtaccaacag 4587
>3x_Contig38
Length = 925
Score = 747 bits (377), Expect = 0.0
Identities = 499/531 (93%), Gaps = 18/531 (3%)
Strand = Plus / Minus
Query: 290 actttcttaacgggtgaatttacaaacatttctaatgatcttcattttaagcttccagaa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 actttcttaacgggtgaatttacaaacatttctaatgatcttcattttaagcttccagaa 524
Query: 350 agttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaagtagca 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaagtagca 464
Query: 410 gcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagctatacaa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagctatacaa 404
Query: 470 tgtcatcaggcttcaagatgaagaggtcaaggagtcctgacccgataggaatcgataact 529
||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 403 tgtcatcaggcttcaagatgaagaggtcaaggagtcctgacccgata----------act 354
Query: 530 ataagatacaacggctaatatatgatttcgaaaacctatcgttggctcctaggggaaccg 589
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggggaaccg 294
Query: 590 atggggatanag-aacataaaattgattcagggttgaactcattcaaagcagttgtaaat 648
|| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 at-gggataaagaaacataaaattgattcagggttgaactcattcaaagcagttgtaaat 235
Query: 649 aaaaagatgtggggatgtagttgaacgcgaattgagtggttcaaacaaaaatgataagat 708
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 aaaaggatgt-gggatgtagttgaacgcgaattgagtggttcaaacaaaaatgataagat 176
Query: 709 atatgaaagatttttcgatcatgtaccgaagttttaactcgcaggtaattaaaaggtatg 768
|||||||||| | |||||||||||| ||| ||||||||||||||||| ||| ||||||
Sbjct: 175 atatgaaagaatattcgatcatgta-cgacagtttaactcgcaggtaataaaatggtatg 117
Query: 769 accgggcgatcttgtggtaaccaggcttgtggggtaaaaaggtaccaacag 819
| | ||||||| |||||| | || |||||| |||||||| |||||||||||
Sbjct: 116 a-ctggcgatc-tgtggt-agcaagcttgt-gggtaaaatggtaccaacag 70
Score = 327 bits (165), Expect = 2e-89
Identities = 171/173 (98%)
Strand = Plus / Minus
Query: 73 cttataacgttgttgaagtaaaccaagttgctgtgaactaaatgtttcagtatgaaaaag 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 cttataacgttgttgaagtaaaccaagttgctgtgaactaaatgtttcagtatgaaaaag 731
Query: 133 acattcgaaacccttaattatgaagaagatcaaatacatatctcttagaagaaacaaaag 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 acattcgaaacccttaattatgaagaagatcaaatacatatctcttagaagaaacaaaag 671
Query: 193 aaaaaaagcatattaaaggcaatattgaaggctcgatcaagagatatctaaca 245
|| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 670 aagaaaagcatattaaaggcaatattgaaggctcgttcaagagatatctaaca 618
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7253
Number of Sequences: 1807
Number of extensions: 7253
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 2
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)