BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZE02FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1486 1568 0.0
>3x_Contig1486
Length = 12131
Score = 1568 bits (791), Expect = 0.0
Identities = 827/835 (99%), Gaps = 3/835 (0%)
Strand = Plus / Minus
Query: 94 ttctcctgttcagaaacactttgagtacaaatcaatgcactcttgatatctgggatttga 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2952 ttctcctgttcagaaacactttgagtacaaatcaatgcactcttgatatctgggatttga 2893
Query: 154 tacaacatcaatattgatcaatcacgtcgttcttgctcaacggtatctgctgtggcagtt 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2892 tacaacatcaatattgatcaatcacgtcgttcttgctcaacggtatctgctgtggcagtt 2833
Query: 214 tttatgagttccttttatagtgcataagtaagatcaaatgttttggttgattcaatatat 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2832 tttatgagttccttttatagtgcataagtaagatcaaatgttttggttgattcaatatat 2773
Query: 274 aaaatttttttaatatgttaacaataatcctattaaactaatatcaaacgaattcaacat 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2772 aaaatttttttaatatgttaacaataatcctattaaactaatatcaaacgaattcaacat 2713
Query: 334 ggcactagtgactgacattaataaaggataactgcgatctgattatagttacactaacat 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2712 ggcactagtgactgacattaataaaggataactgcgatctgattatagttacactaacat 2653
Query: 394 cgaccttcaatacaccgaaagattctagaaaaagtctaaaatgtccggctctaaagtagg 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2652 cgaccttcaatacaccgaaagattctagaaaaagtctaaaatgtccggctctaaagtagg 2593
Query: 454 agctcctatggtacctccaatcaattgcatatacaactaccttcatcatcagacaacagt 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2592 agctcctatggtacctccaatcaattgcatatacaactaccttcatcatcagacaacagt 2533
Query: 514 aacgttttggttatacgaacaagtacagacacgtataagaggcaagatcagaggctttga 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2532 aacgttttggttatacgaacaagtacagacacgtataagaggcaagatcagaggctttga 2473
Query: 574 tgagttcatgaatgtggtaatagatgacgctttcgaaatagctgtagatccgaaaagtgg 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2472 tgagttcatgaatgtggtaatagatgacgctttcgaaatagctgtagatccgaaaagtgg 2413
Query: 634 taaagagagcgatgataaagcagtgtttcttgggagaattatgttgaaaggtgataatat 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2412 taaagagagcgatgataaagcagtgtttcttgggagaattatgttgaaaggtgataatat 2353
Query: 694 aacacttgttgtggcaaattgataatgcctactcagaaaatgataataggatgaaagata 753
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2352 aacacttgttgtggcaaattgataatgcctactcagaaaatgataataggatgaaagaaa 2293
Query: 754 gatgcttagagtgtagaagcattgatcggactctgtcgtgtaattatataagcctgtata 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2292 gatgcttagagtgtagaagcattgatcggactctgtcgtgtaattatataagcctgtata 2233
Query: 814 ttataacggaataatgataggcactngaaatttcgataacggcgaacagcactatcaagg 873
||||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 2232 ttataacggaaaaatgaaaggcact-gaaatttcgataacggcgacaagcactatcaagg 2174
Query: 874 ctaataaaga-atattgttcgtaatcttatggatctatttac-atgtgttgctca 926
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2173 ctaataaagatatattgttcgtaatcttatggatctatttacaatgtgttgctca 2119
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6479
Number of Sequences: 1807
Number of extensions: 6479
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)