BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZE02RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1634 1376 0.0
>3x_Contig1634
Length = 14275
Score = 1376 bits (694), Expect = 0.0
Identities = 770/792 (97%), Gaps = 3/792 (0%)
Strand = Plus / Minus
Query: 48 ctggatttagtgttgacgaactacactattatttaactaaggcggcagatgaaatgtatg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8701 ctggatttagtgttgacgaactacactattatttaactaaggcggcagatgaaatgtatg 8642
Query: 108 aaactttgtctctacacaactctgccaaggccaaactatgatatagcacaggcaccagtt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8641 aaactttgtctctacacaactctgccaaggccaaactatgatatagcacaggcaccagtt 8582
Query: 168 tatattgttttagtacgagtccattatatatgatattctaaccactttatgatctattat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8581 tatattgttttagtacgagtccattatatatgatattctaaccactttatgatctattat 8522
Query: 228 gaattactgaacaaggatgcactggcaacaattggtaccatcatcaaccatacgttaacg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8521 gaattactgaacaaggatgcactggcaacaattggtaccatcatcaaccatacgttaacg 8462
Query: 288 gcctatcttacccaatgattgacatcttttctctcccttcagttactgttgttcgcatat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8461 gcctatcttacccaatgattgacatcttttctctcccttcagttactgttgttcgcatat 8402
Query: 348 ctaccatattatatatcaaatgagaatatggcaaagaaatttaaaatcgaccttatcata 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8401 ctaccatattatatatcaaatgagaatatggcaaagaaatttaaaatcgaccttatcata 8342
Query: 408 gtgagtataccgaggaagacactttatcactggataaaagaaggaagaagcgtgcgaaga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8341 gtgagtataccgaggaagacactttatcactggataaaagaaggaagaagcgtgcgaaga 8282
Query: 468 gtgtcaatatgaggtcggtagaagaaatcaatgtgaggacgtataatcctaacatttatt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8281 gtgtcaatatgaggtcggtagaagaaatcaatgtgaggacgtataatcctaacatttatt 8222
Query: 528 tcagcagtttgaaccaaactcatcaaagtgcaagggtctcgaaacagtctcaaacctcag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8221 tcagcagtttgaaccaaactcatcaaagtgcaagggtctcgaaacagtctcaaacctcag 8162
Query: 588 caagatacaagagagtcaattattcattggctgatttggaggcaaagatatataatcagc 647
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8161 caagaaacaagagagtcaattattcattggctgatttggaggcaaagatatataatcagc 8102
Query: 648 ccaagggatgcgataaagacgacatanatcaactgacaggatctgattagcatgccttgc 707
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 8101 ccaagggaagcgataaagacgacataaatcaactgacaggatctgataagcatgccttgc 8042
Query: 708 ctgatttgttacgatctattaagcggttcatggaacttgacacag-aaactttcaggatc 766
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| ||||
Sbjct: 8041 ctgatttgttacgatctaataagcggttcatggaacttgacacagaaaactatcaagatc 7982
Query: 767 ttcgngaagtttacactcttcttcagtaccat-acgggccttgacaaggttaggatcggt 825
|||| |||||| ||||||| |||||| ||| ||||| || |||| | || ||||| |
Sbjct: 7981 ttcgtgaagttacaactcttc-tcagtaacatcacggggctgaacaaagataagatcgat 7923
Query: 826 caaacaagcacc 837
||||||||||||
Sbjct: 7922 caaacaagcacc 7911
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6568
Number of Sequences: 1807
Number of extensions: 6568
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)