BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZE03FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1705 1469 0.0
>3x_Contig1705
Length = 16734
Score = 1469 bits (741), Expect = 0.0
Identities = 829/851 (97%), Gaps = 6/851 (0%)
Strand = Plus / Plus
Query: 86 ttcgtcagacgaggaaggatttttgtaaatagcaaataacttttcgtaatttttggcatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7934 ttcgtcagacgaggaaggatttttgtaaatagcaaataacttttcgtaatttttggcatt 7993
Query: 146 accgtctctggcaacagtaccgaatacggatgatttaatcaatggtggaatagcgttgct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7994 accgtctctggcaacagtaccgaatacggatgatttaatcaatggtggaatagcgttgct 8053
Query: 206 gtcgccagaagtgtatttctcaaacattttcaaagcggccttaacgacaactggatcctt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8054 gtcgccagaagtgtatttctcaaacattttcaaagcggccttaacgacaactggatcctt 8113
Query: 266 tgctgcagcggaggatgagaacatttcaaccttcaacctttgagacgcgtaagactcgtt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8114 tgctgcagcggaggatgagaacatttcaaccttcaacctttgagacgcgtaagactcgtt 8173
Query: 326 ctctgagaattcccagcccaaagagtgggtcttctctgagaccaattgtctagtaaattc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8174 ctctgagaattcccagcccaaagagtgggtcttctctgagaccaattgtctagtaaattc 8233
Query: 386 atccaaggcttccaaagtttcctttggctcaaaggcccaagcagccttcaaagatcccaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8234 atccaaggcttccaaagtttcctttggctcaaaggcccaagcagccttcaaagatcccaa 8293
Query: 446 actgtttatcatctgctcccagacaacaaaggagtcctcgtttttccattgagaaatcaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8294 actgtttatcatctgctcccagacaacaaaggagtcctcgtttttccattgagaaatcaa 8353
Query: 506 ttgtaagaaatttttggtggaagtataacctgacaaggacaacgtcttacaatcagcaac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8354 ttgtaagaaatttttggtggaagtataacctgacaaggacaacgtcttacaatcagcaac 8413
Query: 566 taaaccagttcggtcttcaacagtcaacaaatcagattgtttggataaagtagtccatct 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8414 taaaccagttcggtcttcaacagtcaacaaatcagattgtttggataaagtagtccatct 8473
Query: 626 atcatcagagtatgaagtgacgtagatacctgcttggtttgcgttagttttgataaagtc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8474 atcatcagagtatgaagtgacgtagatacctgcttggtttgcgttagttttgataaagtc 8533
Query: 686 aacatcctcaacagtaacagnttattctctttcgtccaaagttaacgaatgatcaacacc 745
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 8534 aacatcctcaacagtaacagttaattctctttcgtccaaagttaacgaatgatcaacacc 8593
Query: 746 agaatttgtctttaaagacanaaacactggatacaaagttttatcttcttcaggcttgac 805
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 8594 agaatttgtctttaaagacaaaaacactggatacaaagttttatcttcttcaggcttgac 8653
Query: 806 atcagctgtaattcaagttacggttttgctttgaaagtgattttgggaccattcttcagt 865
||||||||| |||||||| |||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 8654 atcagctgt-attcaagtaacggttttgc-ttgaaagtgattttgtgacca-tcttcagt 8710
Query: 866 tacaggaaaccattggggataccacttttttggttccatatattcattacgtttaccaac 925
||| ||||| |||||| | | |||||||||| |||| |||| ||| ||| |||| |||
Sbjct: 8711 aaca-gaaacgattgggaaaccaacttttttgg-tccagatatccataacg-ttacgaac 8767
Query: 926 ctccttaccag 936
||||||||||
Sbjct: 8768 gtccttaccag 8778
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6505
Number of Sequences: 1807
Number of extensions: 6505
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)