BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZE04FM1.SCF screened BAC_end
(881 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig602 1513 0.0
>3x_Contig602
Length = 2648
Score = 1513 bits (763), Expect = 0.0
Identities = 788/794 (99%), Gaps = 2/794 (0%)
Strand = Plus / Plus
Query: 87 ccgaagagttgtcatttgagggaactctgaaaacaggtcaaacgtttatatgggaaccaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ccgaagagttgtcatttgagggaactctgaaaacaggtcaaacgtttatatgggaaccaa 756
Query: 147 taccagatttgtgtaacgttgagcacctcgaagggattaagaagttgctcaacggaccat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 taccagatttgtgtaacgttgagcacctcgaagggattaagaagttgctcaacggaccat 816
Query: 207 accatttcatcttttcgccaaatgcggaagaaggcgctaggatgctgggtgaaacagagc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 accatttcatcttttcgccaaatgcggaagaaggcgctaggatgctgggtgaaacagagc 876
Query: 267 caactgaactttcggattgcagcacaatattattgaaattagcagcattgattaaacctg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 caactgaactttcggattgcagcacaatattattgaaattagcagcattgattaaacctg 936
Query: 327 gtaacatttgtgtcctcagatgtggtaaaaaagggtcattggccttaatttgcaataaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 gtaacatttgtgtcctcagatgtggtaaaaaagggtcattggccttaatttgcaataaaa 996
Query: 387 atccatcaaacgatgacattatccatttcccagcataccattacaagactccagaatgtg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 atccatcaaacgatgacattatccatttcccagcataccattacaagactccagaatgtg 1056
Query: 447 tcattgatccaacaggaggcggaaatactttccttggagcatttgcattcgcatacgcca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 tcattgatccaacaggaggcggaaatactttccttggagcatttgcattcgcatacgcca 1116
Query: 507 tgtgtaaagacatttcaattgccagtatatgtggcaatattgctgcaggttgtgccatcg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 tgtgtaaagacatttcaattgccagtatatgtggcaatattgctgcaggttgtgccatcg 1176
Query: 567 aacagatcggtgtaccatctcacaatggaatgcactggaataaaacgacttttgcagata 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1177 aacagatcggtgtaccatctcacaatggaatgcactggaataaaacgacttttgcagata 1236
Query: 627 gattattatattatttatccacttatgaactgaagcagggccacagtgaaatattgaact 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1237 gattattatattatttatccacttatgaactgaagcagggccacagtgaaatattgaact 1296
Query: 687 ctcttcaaccaatgaaatattaagtctgtaggtacctattgngaacagttangatcag-t 745
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
Sbjct: 1297 ctcttcaaccaatgaaatattaagtctgtaggtacctattgggaacagtta-gatcagtt 1355
Query: 746 ttttattttaatttgtattatcatacgtattgggaaagaatattcaatttcagagcattg 805
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1356 ttttattttaatttgtattatcatacgtattgggaagaaatattcaatttcagagcattg 1415
Query: 806 atagtgtcgaccagttcccctctaacttttacggaccgtacagaaacaaatggtacactt 865
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1416 atagtgtcgaccagttcccttctaacttttacggaccgtacagaaacaaatggtacactt 1475
Query: 866 actaaacccatctt 879
||||||||||||||
Sbjct: 1476 actaaacccatctt 1489
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5866
Number of Sequences: 1807
Number of extensions: 5866
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 881
length of database: 10,358,551
effective HSP length: 16
effective length of query: 865
effective length of database: 10,329,639
effective search space: 8935137735
effective search space used: 8935137735
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)