BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZE05FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1365 1616 0.0
>3x_Contig1365
Length = 9349
Score = 1616 bits (815), Expect = 0.0
Identities = 843/850 (99%), Gaps = 2/850 (0%)
Strand = Plus / Minus
Query: 86 attacaacaagattaaagcagatatatttggagaatgaggaattctattcgattgaccaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8245 attacaacaagattaaagcagatatatttggagaatgaggaattctattcgattgaccaa 8186
Query: 146 gtaaacagactggtgaaaaggtataatgaattgagaaatacttcaattgtgagaaacggc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8185 gtaaacagactggtgaaaaggtataatgaattgagaaatacttcaattgtgagaaacggc 8126
Query: 206 tacattgataaaaaatctcaacatattttagatgaattacacattagtgttaattcaact 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8125 tacattgataaaaaatctcaacatattttagatgaattacacattagtgttaattcaact 8066
Query: 266 cagaacaatgaagattctacaaatacctctattcgatcattgcaggaagatgatcctgaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8065 cagaacaatgaagattctacaaatacctctattcgatcattgcaggaagatgatcctgaa 8006
Query: 326 atagaacatccagattggtcatcgatgcagaaggtaatataacctctgcatctacaattc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8005 atagaacatccagattggtcatcgatgcagaaggtaatataacctctgcatctacaattc 7946
Query: 386 taaatggagaaaatacacgtgagctgggatcacgtatcctgatggaaattagttaacaat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7945 taaatggagaaaatacacgtgagctgggatcacgtatcctgatggaaattagttaacaat 7886
Query: 446 aaactttgacttaatattattaaacagtgatatagtaattaaataatagaggatgaataa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7885 aaactttgacttaatattattaaacagtgatatagtaattaaataatagaggatgaataa 7826
Query: 506 aataaatgacagtgccagtaccctaaaaagtaacgggaataattaaagtcgaaacatgat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7825 aataaatgacagtgccagtaccctaaaaagtaacgggaataattaaagtcgaaacatgat 7766
Query: 566 aaaaaaataaaaagtcgatacagtaccgaaaatgatgaacgcctaggataataaaataat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7765 aaaaaaataaaaagtcgatacagtaccgaaaatgatgaacgcctaggataataaaataat 7706
Query: 626 gtaatgagaaaaaatgaaatacaatgtaaaagtccgcctagttgattaataggtaaaaga 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7705 gtaatgagaaaaaatgaaatacaatgtaaaagtccgcctagttgattaataggtaaaaga 7646
Query: 686 aaaaagaattagcgaagtgattgatgcgaatagaataatatatcccgaaattaataatga 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7645 aaaaagaattagcgaagtgattgatgcgaatagaataatatatcccgaaattaataatga 7586
Query: 746 tgagtgatgataatacaatgatactgtcggggaataggaaacanataaatggtaaaatca 805
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 7585 tgagtgatgataatacaatgatactgtcggggaataggaaacaaataaatggtaaaatca 7526
Query: 806 gtctagaagaatggagaataagaataaaaaagttgaaatagaaaacctgaaatcaagtcc 865
||||||||||| |||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 7525 gtctagaagaa-ggaggaaaagaaaaaaaaagttgaaatagaaaacctgaaatcaagtcc 7467
Query: 866 acaagtgggttggacacatgatgatgaatgatttgtttagaaactgtgaaaaaatgggta 925
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 7466 acaagtggg-tggacacatgatgatgaatgatttgtttagaaactgtgaaaaattgggta 7408
Query: 926 tcgtgtgaga 935
||||||||||
Sbjct: 7407 tcgtgtgaga 7398
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9283
Number of Sequences: 1807
Number of extensions: 9283
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)