BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZE05RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1061 1296 0.0
>3x_Contig1061
Length = 4663
Score = 1296 bits (654), Expect = 0.0
Identities = 785/820 (95%), Gaps = 7/820 (0%)
Strand = Plus / Plus
Query: 44 cttgtatcgattattcatttttgatttgactgatctatagagtgattgagaatggcgttt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3240 cttgtatcgattattcatttttgatttgactgatctatagagtgattgagaatggcgttt 3299
Query: 104 gattttcagcaagtaacaatctttactattacttccacaggcacaatcacaacttcctag 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3300 gattttcagcaagtaacaatctttactattacttccacaggcacaatcacaacttcctag 3359
Query: 164 aatggtgtctatggaatgtatgaaaagatacctttgtggctcttcaatggaatctatgct 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3360 aatggtgtctatggaatgtatgaaaagatacctttgtggctcttcaatggaatctatgct 3419
Query: 224 ctcattatgatttattaacttccatattggatgtctcaggtcccagtcccatttgatgtg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3420 ctcattatgatttattaacttccatattggatgtctcaggtcccagtcccatttgatgtg 3479
Query: 284 aagttcttcacctttatcaatgaatcttagagctctaagaacgaactttatctcatcctg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3480 aagttcttcacctttatcaatgaatcttagagctctaagaacgaactttatctcatcctg 3539
Query: 344 gttattggaattagtcaatttgattgtgactagttcaacattgggattgcatgatcgtct 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3540 gttattggaattagtcaatttgattgtgactagttcaacattgggattgcatgatcgtct 3599
Query: 404 caagtatctcgttaaatttccacttaacctggcatcaatataaatcggccagtggggatg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3600 caagtatctcgttaaatttccacttaacctggcatcaatataaatcggccagtggggatg 3659
Query: 464 aataatgactttaggttttgcagttccccagactctatagttatttcttggatcttctaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3660 aataatgactttaggttttgcagttccccagactctatagttatttcttggatcttctaa 3719
Query: 524 gtatttcctttggaaatcaatctctcctaagaattcatcgatgtagtctccttcatcaca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3720 gtatttcctttggaaatcaatctctcctaagaattcatcgatgtagtctccttcatcaca 3779
Query: 584 tccttgcttcaagtatacagctaacttggggtatccagngaaacatcttgagtgattact 643
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 3780 tccttgcttcaagtatacagctaacttggggtatccagggaacaatcttgagtgattact 3839
Query: 644 gtcagattatggtttattttcattcgnaatatgttttgaaacgtaatttatgattaagta 703
|||||| ||||||||| ||||| ||| |||| | |||||| ||||||||||| | |||
Sbjct: 3840 gtcagaatatggtttaatttcaatcggaata-ggtttgaacgttaatttatgataaggta 3898
Query: 704 taacccagtcgtcattagccgtgttcttttaccaaaagtt-aacgtatttattcttggaa 762
||||||||||||||| || |||| |||||||| ||||||| ||||||||||| ||| ||
Sbjct: 3899 taacccagtcgtcatcag-cgtggtcttttacgaaaagttcaacgtatttatctttgtaa 3957
Query: 763 tcattttgaagccaaagggagattccctgtaaggataagctcctttagcattaataaaaa 822
||| ||||||| ||||||||||| | |||| |||||||||| |||||||||| || ||||
Sbjct: 3958 tca-tttgaagtcaaagggagatacactgt-aggataagcttctttagcatttattaaaa 4015
Query: 823 caatgttcctaaaaagaatctgcggaatggaatggcctct 862
|||||||| | || || |||||||| ||||||||||||||
Sbjct: 4016 caatgttcgt-aagaggatctgcgg-atggaatggcctct 4053
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6851
Number of Sequences: 1807
Number of extensions: 6851
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)