BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZE06RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1562 1415 0.0
>3x_Contig1562
Length = 11773
Score = 1415 bits (714), Expect = 0.0
Identities = 818/842 (97%), Gaps = 8/842 (0%)
Strand = Plus / Minus
Query: 49 acaccgatgaggttatcaggatcattttcaataaagttacagttagacgttggatgtaca 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7165 acaccgatgaggttatcaggatcattttcaataaagttacagttagacgttggatgtaca 7106
Query: 109 accgctggtgagatgc-agttt-atctt-agcattcttgaacttccagctctcatagcct 165
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 7105 accgctggtgagatgccagttttatcttcagcattcttgaacttccagctctcatagcct 7046
Query: 166 tcttcgtaagcccattttgtgaactcaaacattttcagatctagtggatcacctaaaagt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7045 tcttcgtaagcccattttgtgaactcaaacattttcagatctagtggatcacctaaaagt 6986
Query: 226 tcaccatcaatgtgcttcaacgaatggcaagttagaagcgaaaccaaaaagttcttcgct 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6985 tcaccatcaatgtgcttcaacgaatggcaagttagaagcgaaaccaaaaagttcttcgct 6926
Query: 286 ttgaactcttccgcactgttgcaatcggaaagtgtatgcttttgcagtacttcatcacag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6925 ttgaactcttccgcactgttgcaatcggaaagtgtatgcttttgcagtacttcatcacag 6866
Query: 346 tcagttatcaaatcgcttagttgcaaaatggtagaagagccttcaggtttggcaaaatga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6865 tcagttatcaaatcgcttagttgcaaaatggtagaagagccttcaggtttggcaaaatga 6806
Query: 406 attcccaacacgtctaaaccctcttctgtcaatgtacctgttttgtcaaaacacatcata 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6805 attcccaacacgtctaaaccctcttctgtcaatgtacctgttttgtcaaaacacatcata 6746
Query: 466 tccacttttcctccgacatttaccctagtaggtgaaatacagaaaatacccttcttcttg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6745 tccacttttcctccgacatttaccctagtaggtgaaatacagaaaatacccttcttcttg 6686
Query: 526 agtctgcctaaagcaaaacttgttcctatcgtcaatgtagcggg-aagtgccggtggcac 584
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6685 agtctgcctaaagcaaaacttgttcctatcgtcaatgtagcgggaaagtgccggtggcac 6626
Query: 585 cacatttgtgatgatatccaacgctcttagtatcataaccttatactctaattccaacct 644
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 6625 cacaattgtgatgatatccaacgctcttagtatcataaccttatactctaatcccaacct 6566
Query: 645 gatgaattggatacaactaattgagaaacccaacatggcaatcagcgtcatgaaaccgat 704
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 6565 gatgaattggatacaactaattgagaaaccaaacatggcaatcagcgtcatgaaaccgat 6506
Query: 705 gtacttgaaagaatcttcgtaaaatttgaatcccacaggtttgggaaacaccattggcct 764
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 6505 gtacttgaaagaatcttcgtaaaatttgaatcccacaggttttggaaacaccattgacct 6446
Query: 765 tatcaaagaacctttggttgtggaggattcccgtt-ttattaccagtgccaaagccattt 823
|| ||||||||||||||||||||| || ||||||| | || ||||||||||| ||||||
Sbjct: 6445 taccaaagaacctttggttgtgga-gaatcccgttctaatcaccagtgccaatgccattc 6387
Query: 824 cttgtcctgggtgatttcggaccctaatggatttaaataccggtgaaataaaaatgattt 883
|||||||||| ||||||||||||||||| ||||| | ||||| || ||||| ||||||||
Sbjct: 6386 cttgtcctggttgatttcggaccctaat-gattttagtaccgttg-aataagaatgattt 6329
Query: 884 tg 885
||
Sbjct: 6328 tg 6327
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6524
Number of Sequences: 1807
Number of extensions: 6524
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)