BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZE07FM1.SCF screened BAC_end
(878 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig830 1404 0.0
>3x_Contig830
Length = 3109
Score = 1404 bits (708), Expect = 0.0
Identities = 772/786 (98%), Gaps = 6/786 (0%)
Strand = Plus / Plus
Query: 86 cggattcgaatgatgaggacatttcaagctctgaactatcagatgctcctgaactgtcat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 cggattcgaatgatgaggacatttcaagctctgaactatcagatgctcctgaactgtcat 85
Query: 146 tcaatttcaaaggcgacgatgggatcaagttcggtgatgcttcagtagcctccaagaagg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 tcaatttcaaaggcgacgatgggatcaagttcggtgatgcttcagtagcctccaagaagg 145
Query: 206 ctgatgaagatttaggtgaggaagtcaaggataaagatgtgaaacaacctttagattcca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ctgatgaagatttaggtgaggaagtcaaggataaagatgtgaaacaacctttagattcca 205
Query: 266 ttaaaccaaatgtcgatagattggcggtaccgaaattttcagatagtgaggattcagatt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ttaaaccaaatgtcgatagattggcggtaccgaaattttcagatagtgaggattcagatt 265
Query: 326 ataatatcgatcaagaggcatatttcaagaccattgatgatgataacgaaaatattaccg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ataatatcgatcaagaggcatatttcaagaccattgatgatgataacgaaaatattaccg 325
Query: 386 gtatagataacggccttgagactggtgatgacgatatggctattctggatgttgaagaac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtatagataacggccttgagactggtgatgacgatatggctattctggatgttgaagaac 385
Query: 446 agaatatggttaaacagcttgaacgtgatgatcattcttctttcgatgattcgcaggtgg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agaatatggttaaacagcttgaacgtgatgatcattcttctttcgatgattcgcaggtgg 445
Query: 506 aatcaaagtatagagatgggaaacccagaaatgacgacgatgattacgaatacgacgagg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aatcaaagtatagagatgggaaacccagaaatgacgacgatgattacgaatacgacgagg 505
Query: 566 acgatgaagatgatgcaatcatgagtgatttcgatatgcccttttatgaagatcccaagt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acgatgaagatgatgcaatcatgagtgatttcgatatgcccttttatgaagatcccaagt 565
Query: 626 tttccaatctgtattactatgatggcagcgaccaacccttaac-ntaagcacatctttac 684
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 566 tttccaatctgtattactatgatggcagcgaccaacccttaactttaagcacatctttac 625
Query: 685 cgttagtgttaagcgaagagaatgcgt-agatggaagagcgtaagccatttaaacagcgg 743
|||||||||||||||||||||| |||| ||| |||||||||||||| ||| |||||||||
Sbjct: 626 cgttagtgttaagcgaagagaa-gcgtaagagggaagagcgtaagcaattaaaacagcgg 684
Query: 744 gaaaggcangagaaggttgaaaagaagaatgacttccaagaagtctaaacgtgaactttc 803
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 685 gaaaggcaggag-aggttgaaaagaagaatgacttccaagaagtctaaacgtgaacattc 743
Query: 804 tgctacttcagatcttgcagaagatgaatacgtattttgggttatttttnccaaagcgat 863
||||||| ||||||||||||||||||| |||||| |||||||||||||| ||||||||||
Sbjct: 744 tgctactccagatcttgcagaagatgagtacgta-tttgggttattttt-ccaaagcgat 801
Query: 864 gacgag 869
||||||
Sbjct: 802 gacgag 807
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6666
Number of Sequences: 1807
Number of extensions: 6666
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 878
length of database: 10,358,551
effective HSP length: 16
effective length of query: 862
effective length of database: 10,329,639
effective search space: 8904148818
effective search space used: 8904148818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)