BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC37ZE07RM1.SCF screened BAC_end (881 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1310 902 0.0 >3x_Contig1310 Length = 7790 Score = 902 bits (455), Expect = 0.0 Identities = 478/486 (98%), Gaps = 1/486 (0%) Strand = Plus / Minus Query: 53 agcttagaagttaatccgatgagtagtttagtgtttaatgctgttattagttccagttct 112 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2020 agcttagaagttaatccgatgagtagtttagtgtttaatgctgttattagttccagttct 1961 Query: 113 ttctgttctcaacttttcgatgacttttcgaaaacagaaggggttacccggggatgtcaa 172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1960 ttctgttctcaacttttcgatgacttttcgaaaacagaaggggttacccggggatgtcaa 1901 Query: 173 gaccagccccacatatttgctgtgacaccgtcaaataactatatatctggttgacagcta 232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1900 gaccagccccacatatttgctgtgacaccgtcaaataactatatatctggttgacagcta 1841 Query: 233 tgcctcattagaatgatttagctagtctacaatgactacagatggagtttgtaattgcat 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1840 tgcctcattagaatgatttagctagtctacaatgactacagatggagtttgtaattgcat 1781 Query: 293 tcgctcattcaggctttttatagggtatttttatgaggttttagcttctcattccacatt 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1780 tcgctcattcaggctttttatagggtatttttatgaggttttagcttctcattccacatt 1721 Query: 353 gtagaatgtggcatcggaaacgacgcaggtatcaagaaattaaacgataggtgatcccag 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1720 gtagaatgtggcatcggaaacgacgcaggtatcaagaaattaaacgataggtgatcccag 1661 Query: 413 caacagcagctacgctgctgttgcattgattggggatgtgaattcagcatgctagtacta 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1660 caacagcagctacgctgctgttgcattgattggggatgtgaattcagcatgctagtacta 1601 Query: 473 gcgtagtactgtaacggggaggagggggggggatncnnnttgggagcgtggntttgtttt 532 ||||||||||||||||||||||| |||||||||| | |||||||||||| ||||| | Sbjct: 1600 gcgtagtactgtaacggggagga-ggggggggatccagtttgggagcgtggctttgtatc 1542 Query: 533 tggggt 538 |||||| Sbjct: 1541 tggggt 1536 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 33,253 Number of Sequences: 1807 Number of extensions: 33253 Number of successful extensions: 3364 Number of sequences better than 1.0e-20: 1 length of query: 881 length of database: 10,358,551 effective HSP length: 16 effective length of query: 865 effective length of database: 10,329,639 effective search space: 8935137735 effective search space used: 8935137735 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)