BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC37ZE08FM1.SCF screened BAC_end
         (928 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1335                                                        1306   0.0  

>3x_Contig1335 
          Length = 8696

 Score = 1306 bits (659), Expect = 0.0
 Identities = 736/758 (97%), Gaps = 3/758 (0%)
 Strand = Plus / Minus

                                                                        
Query: 89   catattaatcagattttctcacttaaaacactaagatactatgtcaattcctagtaaatc 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5995 catattaatcagattttctcacttaaaacactaagatactatgtcaattcctagtaaatc 5936

                                                                        
Query: 149  ctactaatttgcttctgaactttattgatctcgcgtaaacacttacctgaggacatatgc 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5935 ctactaatttgcttctgaactttattgatctcgcgtaaacacttacctgaggacatatgc 5876

                                                                        
Query: 209  ttcgatcattagacagatctctttgtattctgtacttttccaaggtttcgacacgatttt 268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5875 ttcgatcattagacagatctctttgtattctgtacttttccaaggtttcgacacgatttt 5816

                                                                        
Query: 269  tttcgattctaaatagagaatttccgaaaacggtagataaacgtgactatcatgtggata 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5815 tttcgattctaaatagagaatttccgaaaacggtagataaacgtgactatcatgtggata 5756

                                                                        
Query: 329  gaaatggggaaggtgacaacacttggattcgggattcggtgaggaaccacaatataccta 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5755 gaaatggggaaggtgacaacacttggattcgggattcggtgaggaaccacaatataccta 5696

                                                                        
Query: 389  gaaaagtatcctagattcattgaacaacaggtagttcttaatgattaaattacggtatac 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5695 gaaaagtatcctagattcattgaacaacaggtagttcttaatgattaaattacggtatac 5636

                                                                        
Query: 449  attttccaatgttcacgtgactcaaaactgtcatgtgaccgacacaaagaatacactact 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5635 attttccaatgttcacgtgactcaaaactgtcatgtgaccgacacaaagaatacactact 5576

                                                                        
Query: 509  tagatttcccaattaggagaaacgtaaacattgaaatagtgatataaagtcatagaaatg 568
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5575 tagatttcccaattaggagaaacgtaaacattgaaatagtgatataaagtcatagaaatg 5516

                                                                        
Query: 569  caatgctacatgtgtagataccacattacagtgttcatcacgacaacctataaaactgct 628
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5515 caatgctacatgtgtagaaaccacattacagtgttcatcacgacaacctataaaactgct 5456

                                                                        
Query: 629  attcaggagccangtactaaataagatcaaacagattcaagcctagttcaaagtagctca 688
            |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5455 attcaggagccaggtactaaataagatcaaacagatacaagcctagttcaaagtagctca 5396

                                                                        
Query: 689  aagaataatgactgccggggcaatttcaaccattacatcagaaacaagattctcaaactg 748
            |||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 5395 aagaataatgactgcc-ggccaatttcaaccattacatcagaaacaggattctcaaactg 5337

                                                                        
Query: 749  cgaggacaagttttgcacaaggcccttgtttataaacccttcccacacccaccttttaaa 808
            |||| ||||| ||||||||||||| |  || | ||||| |  ||||| ||| |||| | |
Sbjct: 5336 cgagtacaag-tttgcacaaggccatgtttaagaaaccatcaccaca-ccagctttcaga 5279

                                                  
Query: 809  aatgaagaacaagtttgcttcttctaccgatgaattgc 846
            |||||||||||||||||||||| |||||||||| ||||
Sbjct: 5278 aatgaagaacaagtttgcttctcctaccgatgatttgc 5241


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6172
Number of Sequences: 1807
Number of extensions: 6172
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)