BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZE08RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1173 1354 0.0
>3x_Contig1173
Length = 7454
Score = 1354 bits (683), Expect = 0.0
Identities = 774/798 (96%), Gaps = 5/798 (0%)
Strand = Plus / Minus
Query: 40 aagcttcccatattatgagtcctctatcacttgatgaatttaaaaagagctggtttgact 99
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 aagcttcccatattatgag-cctctatcacttgatgaatttaaaaagagctggtttgact 1012
Query: 100 gtcatggtgtgttatgtgtcatggttctcggtgaacttccggagttagattactcagtac 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 gtcatggtgtgttatgtgtcatggttctcggtgaacttccggagttagattactcagtac 952
Query: 160 caattaaccgctctgaagaaatagatgaagtattaggcctgaaatatagtgaaaggttta 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 caattaaccgctctgaagaaatagatgaagtattaggcctgaaatatagtgaaaggttta 892
Query: 220 cgtcaacttatatgaaaagaaaggaacgtcgtaatttgaacctcagcattcaatgggaga 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 cgtcaacttatatgaaaagaaaggaacgtcgtaatttgaacctcagcattcaatgggaga 832
Query: 280 gacagtgtcttggaatttttgatttaaaacctgcatatccaggccgttcttctcatgtcg 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gacagtgtcttggaatttttgatttaaaacctgcatatccaggccgttcttctcatgtcg 772
Query: 340 ccactggcacattcctggtaaatgcaggtattagagggaaaggtattggcaaaactttag 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 ccactggcacattcctggtaaatgcaggtattagagggaaaggtattggcaaaactttag 712
Query: 400 tggattgttttctgaactgggctcctcagcttgggtttacatcgtgttactttccgttgg 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tggattgttttctgaactgggctcctcagcttgggtttacatcgtgttactttccgttgg 652
Query: 460 tatacggtactaatgtaggaatacgaagaatatttgagtcatctaactttaggagaattg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tatacggtactaatgtaggaatacgaagaatatttgagtcatctaactttaggagaattg 592
Query: 520 gaaaacttccagaatcaggtattttgaaaggatttgactctncagtagactcattcatat 579
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 591 gaaaacttccagaatcaggtattttgaaaggatttgactctccagtagactcattcatat 532
Query: 580 atggtaaagagtttactcatgttagtaaacacatgaactctttacattcatcagtggacg 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 atggtaaagagtttactcatgttagtaaacacatgaactctttacattcatcagtggacg 472
Query: 640 acactattaaatgcaaatacgaaagactcatatattatctagagcaccgagattaccccc 699
||||||| ||| ||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 471 acactataaaagcaaaatacgaaagactcatatattatctagagcacggagaataccccc 412
Query: 700 catcatgtaatagaaatgagaagggcagattacgggtaa-ttgctaagaagcatcccctt 758
|||||||||||||||||||||||| ||||||||||||| ||| |||||||||| ||| |
Sbjct: 411 catcatgtaatagaaatgagaaggcaagattacgggtaatttgttaagaagcattccc-t 353
Query: 759 tattacggaaaagct-catttcaaaagaaaggaagttgtgttttgattcaccacgacagt 817
||||| | |||||| ||||||||| |||||||||||||| | |||| ||| ||||||||
Sbjct: 352 tattaacggaaagctccatttcaaaggaaaggaagttgtg-tatgatccacaacgacagt 294
Query: 818 tgaggattgcatatgaaa 835
|||| |||||||||||||
Sbjct: 293 tgagaattgcatatgaaa 276
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6386
Number of Sequences: 1807
Number of extensions: 6386
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)