BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZE09FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1275 1211 0.0
>3x_Contig1275
Length = 5476
Score = 1211 bits (611), Expect = 0.0
Identities = 727/753 (96%), Gaps = 10/753 (1%)
Strand = Plus / Minus
Query: 102 tttcccatcagagagatcatggtttgttgctacaactacatcaccgctgacagcgaggga 161
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 5476 tttcccatcagagagatcatggtttgt-gctacaactacatcaccgctgacagcgagg-a 5419
Query: 162 aggctcatccgaattaaaatctgcatgaagttcgtatgcattttccttcgatgacgaata 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5418 aggctcatccgaattaaaatctgcatgaagttcgtatgcattttccttcgatgacgaaga 5359
Query: 222 tatt-acagaagggcttccttggtacccagagttcaaaaggtcattttcgttattcggat 280
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 5358 tattcacagaagggcttccttg-tacccagagttcaaaaggtcattttcgttattcg-at 5301
Query: 281 accccatttgcccagtttcagatatatcaggcactgaagtcacagatgggtggtatggta 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5300 accccatttgcccagtttcagatatatcaggcactgaagtcacagatgggtggtatggta 5241
Query: 341 tctgatctgacgcagtagcagaattgtgaggaatatttaacgtaatgtctgtattggaaa 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5240 tctgatctgacgcagtagcagaattgtgaggaatatttaacgtaatgtctgtattggaaa 5181
Query: 401 ttgatagctgaatgtttgattgttgcagttcatttttcgattcattttcattaacttcaa 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5180 ttgatagctgaatgtttgattgttgcagttcatttttcgattcattttcattaacttcaa 5121
Query: 461 tggataactcatctgcttgcagatcaaggctttcttcatcagtaaagtggaggatttttt 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5120 tggataactcatctgcttgcagatcaaggctttcttcatcagtaaagtggaggatttttt 5061
Query: 521 gagtttcagcgttaattttttgctcaactgctaactcttccagctccacagttcgatgca 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5060 gagtttcagcgttaattttttgctcaactgctaactcttccagctccacagttcgatgca 5001
Query: 581 ctggttcaagcgattctctgaacgaaacttcangttcagtagtaatcttttcaatttcac 640
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 5000 ctggttcaggcgattctctgaacgaaacttcaggttcagtagtaatcttttcaatttcac 4941
Query: 641 tattattaantatc-tcggttattatttcttctatttcgatgtaacttgtggtgcgaacg 699
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4940 tattattaa-tatcttcggttattatttcttctatttcgatgtaacttgtggtgcgaacg 4882
Query: 700 cgtacccgcatgtcagctgtttccattacaataagctcggcttatttctttttgcgt-gg 758
||||||||||||||||||| ||||||||||||| ||||||| || ||| | |||||| ||
Sbjct: 4881 cgtacccgcatgtcagctggttccattacaataggctcggc-taattcctcttgcgtcgg 4823
Query: 759 atcctncattaaagattctacctactcactcaattcaataaatctcttggcttgtgcatt 818
||||| |||||| |||||||| ||||||||||||||| || ||||||||||||||||| |
Sbjct: 4822 atcctccattaaggattctacgtactcactcaattcagtagatctcttggcttgtgcagt 4763
Query: 819 atcttcgaagggaaat-cagctttatgtacctc 850
||||||||||||| || |||||| |||||||||
Sbjct: 4762 atcttcgaagggagatgcagcttcatgtacctc 4730
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6422
Number of Sequences: 1807
Number of extensions: 6422
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)