BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZE09RM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig724 1336 0.0
>3x_Contig724
Length = 2144
Score = 1336 bits (674), Expect = 0.0
Identities = 714/726 (98%), Gaps = 1/726 (0%)
Strand = Plus / Minus
Query: 48 aactcttcttttaaagtactctaacgcagtaataccaggagtcaattcccctgcctttaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aactcttcttttaaagtactctaacgcagtaataccaggagtcaattcccctgcctttaa 667
Query: 108 aagatatggcctcgtttcatggatgggctgaccacaattaatcggtaatcgttgacgatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aagatatggcctcgtttcatggatgggctgaccacaattaatcggtaatcgttgacgatt 607
Query: 168 gacaaatttcttcaaccccgattgaacatgaaagttccggcatataattgaagtcaaaat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gacaaatttcttcaaccccgattgaacatgaaagttccggcatataattgaagtcaaaat 547
Query: 228 attattcttgaacattatccaacagtgccatttaatcacttgatatgcaaaattccagct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 attattcttgaacattatccaacagtgccatttaatcacttgatatgcaaaattccagct 487
Query: 288 atttagctattgatatttggataaggttccagggagagtatataattcagtggttttcat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atttagctattgatatttggataaggttccagggagagtatataattcagtggttttcat 427
Query: 348 tacgagcctacataataagtaccttcaaacaatttcatcttattccacaccgaatttttc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacgagcctacataataagtaccttcaaacaatttcatcttattccacaccgaatttttc 367
Query: 408 agtttttttttttttgttttcagagcattttataatggcgtcagttcggacagagagatg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 agtttttttttttttgttttcagagcattttataatggcgtcagttcggacagagagatg 307
Query: 468 aatgtgctgaaagaacgtcattcattcaaagtccatgtattaagacaataagcatacgcg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aatgtgctgaaagaacgtcattcattcaaagtccatgtattaagacaataagcatacgcg 247
Query: 528 attaccaagcgcttttcaatgtctttttagaaacgctgattcttctcactttatctgcat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 attaccaagcgcttttcaatgtctttttagaaacgctgattcttctcactttatctgcat 187
Query: 588 ggcagttttgcgtgtcaagattagacttttctggagaaatgtagtcattctcattgtcac 647
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcagttttgcgtgtcaagataagacttttctggagaaatgtagtcattctcattgtcac 127
Query: 648 tatggacctttttctttgatttcccttggtagcccatactattagtaggatcatttatac 707
|||||||| |||||||||||||||| |||||||||||||||||||||| |||||| ||||
Sbjct: 126 tatggacccttttctttgatttcccctggtagcccatactattagtagtatcattaatac 67
Query: 708 tcaattcgggttatgttaaagagtcatcaccagaaagtttttttcaggtttttaaaaggg 767
|||||||| || ||||||| ||||||||| ||||||| |||||||| ||||||||||| |
Sbjct: 66 tcaattcgtgtaatgttaaggagtcatcaacagaaag-ttttttcaagtttttaaaagtg 8
Query: 768 ttttcg 773
||||||
Sbjct: 7 ttttcg 2
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,590
Number of Sequences: 1807
Number of extensions: 14590
Number of successful extensions: 277
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)