BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZE10FM1.SCF screened BAC_end
(891 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1784 1302 0.0
>3x_Contig1784
Length = 28126
Score = 1302 bits (657), Expect = 0.0
Identities = 709/722 (98%), Gaps = 4/722 (0%)
Strand = Plus / Minus
Query: 87 tacaacgtttgaatttaccggaaaattcacagtattcagcaggaaagtcacacacaccac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14483 tacaacgtttgaatttaccggaaaattcacagtattcagcaggaaagtcacacacaccac 14424
Query: 147 agtatataacgttagtgagaggcattctgtatattcttctgtctctttaattaattctaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14423 agtatataacgttagtgagaggcattctgtatattcttctgtctctttaattaattctaa 14364
Query: 207 cgtataaatctcaaactgaatcaagcgtaacttaattacacgtaatgttattctgaacac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14363 cgtataaatctcaaactgaatcaagcgtaacttaattacacgtaatgttattctgaacac 14304
Query: 267 acctcatctcatgcattagtgattttctgtttcaatatttttttcaatatttcactgtaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14303 acctcatctcatgcattagtgattttctgtttcaatatttttttcaatatttcactgtaa 14244
Query: 327 agatcgattcactttcttcagtaactacgtaatctactacttacatatactaagtgttta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14243 agatcgattcactttcttcagtaactacgtaatctactacttacatatactaagtgttta 14184
Query: 387 cttagacatgcacaaatagcggcgaactttggttacactcacactgaatacacttctttg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14183 cttagacatgcacaaatagcggcgaactttggttacactcacactgaatacacttctttg 14124
Query: 447 gaatggcaacgtatgatgattttgctactgatactgtaataataacgtcaaagacaaagg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14123 gaatggcaacgtatgatgattttgctactgatactgtaataataacgtcaaagacaaagg 14064
Query: 507 acgtgtgctccaagcccttgtttgatgagatcgtaaataaggtgcaagaatgtgtggtgg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14063 acgtgtgctccaagcccttgtttgatgagatcgtaaataaggtgcaagaatgtgtggtgg 14004
Query: 567 atactcgacagatttacggtgcggatgccgtgcgtgtcattacactttctggattcaaga 626
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 14003 atactcgacagatttacggtgcggatgccgtgcgtgtcattacacttcctggattcaaga 13944
Query: 627 gaatatttggtacatcgcctaatattgangcgagccgtgaagtgaaatccttgaacccat 686
||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 13943 gaatattggtaacatcgcctaatattgaggcgagccgtgaagtgaaatccttgaacccat 13884
Query: 687 tattccctgattgtaaatttgggttcttcatcacgaatcacgtggctgaatcgaattcac 746
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 13883 tattccctgattgtaaatttgggttctccatcacgaatcacgtggctgaatcgaattcac 13824
Query: 747 aagctggatttncacacngctggcgcctgacactgnngatgaatcacccttaaagtttcc 806
||||||||||| ||||| ||||||| ||||||||| ||||||||| |||||||||| ||
Sbjct: 13823 aagctggatttccacac-gctggcg-ctgacactg-tgatgaatca-ccttaaagttccc 13768
Query: 807 cc 808
||
Sbjct: 13767 cc 13766
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5495
Number of Sequences: 1807
Number of extensions: 5495
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 891
length of database: 10,358,551
effective HSP length: 16
effective length of query: 875
effective length of database: 10,329,639
effective search space: 9038434125
effective search space used: 9038434125
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)