BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZE10RM1.SCF screened BAC_end
(877 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1336 1259 0.0
>3x_Contig1336
Length = 4880
Score = 1259 bits (635), Expect = 0.0
Identities = 699/714 (97%), Gaps = 5/714 (0%)
Strand = Plus / Plus
Query: 32 aagcttttt-acgact-caattggtgctttaccatcaccagaatcaaacaaagttttcat 89
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3535 aagctttttcacgactacaattggtgctttaccatcaccagaatcaaacaaagttttcat 3594
Query: 90 cttggaaccctcaaacttccatttcccgtttggatctaaaattatgggccttggagaatg 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3595 cttggaaccctcaaacttccatttcccgtttggatctaaaattatgggccttggagaatg 3654
Query: 150 ttcagcaaaatgttctggttttggctcatcatctggccaccatttacagttcaaaccggg 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3655 ttcagcaaaatgttctggttttggctcatcatctggccaccatttacagttcaaaccggg 3714
Query: 210 atcatcaaccaagacagtaccacaacccaacatgataccgtcaaacttgtaacggaggta 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3715 atcatcaaccaagacagtaccacaacccaacatgataccgtcaaacttgtaacggaggta 3774
Query: 270 atgggtcattgtattagtttcttgatgagagataatagttctagtccctttgatcttcgc 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3775 atgggtcattgtattagtttcttgatgagagataatagttctagtccctttgatcttcgc 3834
Query: 330 aatacgagcatccaacgattgcgcataagttaaaataacgtacggcttttcctgttcgcc 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3835 aatacgagcatccaacgattgcgcataagttaaaataacgtacggcttttcctgttcgcc 3894
Query: 390 caaaacgccagcattttccggcatgtatggttctaagaaggaaaccaactcctttttcaa 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3895 caaaacgccagcattttccggcatgtatggttctaagaaggaaaccaactcctttttcaa 3954
Query: 450 tggttgtataggcatggcttttgtcgatgtatatagctgacgcgttcagttgtgattggg 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3955 tggttgtataggcatggcttttgtcgatgtatatagctgacgcgttcagttgtgattggg 4014
Query: 510 cagtgatgttcccagttcttaagcagaaaaataaagaatgaagttttttatcttctaaaa 569
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 4015 cagtgatgttcccagttcttaagcagaaaataaaagaatgaag-tttttatcttctaaaa 4073
Query: 570 cttgaagccaatttcnggttgttttaatactcttacactgaaatatatctatgaattatg 629
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4074 cttgaagccaatttcgggttgttttaatactcttacactgaaatatatctatgaattatg 4133
Query: 630 aaacctctgtgttgagataacacttttcccgataattcaaagtgatctcagtcccataaa 689
||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 4134 aaa-ctctgtgttgagataacacttttccggataattcaaagtgatctcagtccgataaa 4192
Query: 690 ttaaaacgaactttcaaaagctcttgatcaatttttatttcaacagcacaaata 743
|||||||||||| ||||||||||| |||| | ||||||||||||||||||||
Sbjct: 4193 ttaaaacgaactctcaaaagctctgagtcaa-tattatttcaacagcacaaata 4245
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,912
Number of Sequences: 1807
Number of extensions: 11912
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 877
length of database: 10,358,551
effective HSP length: 16
effective length of query: 861
effective length of database: 10,329,639
effective search space: 8893819179
effective search space used: 8893819179
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)