BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZF01FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1198 523 e-148
3x_Contig1426 274 3e-73
>3x_Contig1198
Length = 5263
Score = 523 bits (264), Expect = e-148
Identities = 271/272 (99%), Gaps = 1/272 (0%)
Strand = Plus / Plus
Query: 86 ccaacatgagacaattgaagaagggtgctaacgaagctaccaagactttgaaccgtggta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4968 ccaacatgagacaattgaagaagggtgctaacgaagctaccaagactttgaaccgtggta 5027
Query: 146 tttccgaattcattatcatggctgctgactgtgaacctattgaaatcttgttgcacttgc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5028 tttccgaattcattatcatggctgctgactgtgaacctattgaaatcttgttgcacttgc 5087
Query: 206 cattgttgtgtgaagataagaacgttccatacgtctttgttccatccagaactgctttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5088 cattgttgtgtgaagataagaacgttccatacgtctttgttccatccagaactgctttgg 5147
Query: 266 gtagagcttgtggtgtttccagaccagttattgctgcttctattaccactaacgatgctt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5148 gtagagcttgtggtgtttccagaccagttattgctgcttctattaccactaacgatgctt 5207
Query: 326 ctgctatcaaaagccaaatctatgccgttaag 357
||||||||||||||||||||| ||||||||||
Sbjct: 5208 ctgctatcaaaagccaaatct-tgccgttaag 5238
>3x_Contig1426
Length = 8319
Score = 274 bits (138), Expect = 3e-73
Identities = 222/242 (91%), Gaps = 6/242 (2%)
Strand = Plus / Plus
Query: 655 tttttgtctgttcaaataaagaaatggttacaggcctgtgtattccagatgatattgtca 714
||||||| || | |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tttttgtttggttaaattaagaaatggttacaggcctgtgtattccagatgatattgtca 63
Query: 715 agtggtaaaaaaaaataataaatttgacacaatcttttgtggctttcgactatccaaccc 774
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 64 gttggtaaaaaaaagtaataaatttgacacaatcttttgt-gctttcgactatccaaccc 122
Query: 775 taaatttacaagtttgctgaaatgaacttaaaggaaaaagtcctgactgtccatcattag 834
|||||||||||||||| ||||||||||||| ||||| |||| |||||||||||||| |||
Sbjct: 123 taaatttacaagtttgttgaaatgaacttagaggaagaagt-ctgactgtccatcagtag 181
Query: 835 cttgctcg-atattttcaagtttaaccctttacac-ttgttgggtagggaaaagaaaaaa 892
| |||||| |||| |||||||||||||| |||||| ||||| ||||||||||||| ||||
Sbjct: 182 c-tgctcgaatatgttcaagtttaacccattacacattgtt-ggtagggaaaagataaaa 239
Query: 893 at 894
||
Sbjct: 240 at 241
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,089
Number of Sequences: 1807
Number of extensions: 11089
Number of successful extensions: 92
Number of sequences better than 1.0e-20: 2
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)