BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZF01RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 1296 0.0
3x_Contig38 898 0.0
>3x_Contig1517
Length = 8289
Score = 1296 bits (654), Expect = 0.0
Identities = 709/722 (98%), Gaps = 4/722 (0%)
Strand = Plus / Plus
Query: 46 gcttgctaccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtac 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4611 gcttgctaccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtac 4670
Query: 106 atgatcgaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4671 atgatcgaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttc 4730
Query: 166 aactacatcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaat 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4731 aactacatcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaat 4790
Query: 226 tttatgtttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcata 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4791 tttatgtttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcata 4850
Query: 286 tattagccgttgtttcttatagttatcgattcctatcgggtcaggactccttgacctctt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4851 tattagccgttgtttcttatagttatcgattcctatcgggtcaggactccttgacctctt 4910
Query: 346 catcttgaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4911 catcttgaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattc 4970
Query: 406 taagcagatgatctgttcgctgctacttttgtaagtgttgtttcgtttgtcctaatttat 465
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4971 taagcagatgatctgttcgctgctacttttgtaggtgttgtttcgtttgtcctaatttat 5030
Query: 466 cttatggccaaccgagaactttctggaagc-taaaatgaagatcattagaaatgtttgta 524
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5031 cttatggccaaccgagaactttctggaagcttaaaatgaagatcattagaaatgtttgta 5090
Query: 525 aattcacccgttaagaaagtttcgtagatgaagctgatactacaggtactggttatcttt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5091 aattcacccgttaagaaagtttcgtagatgaagctgatactacaggtactggttatcttt 5150
Query: 585 ttcttgttagatatctcttgatcgagccttcaatattgcccttaatatgctttttttctt 644
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5151 ttcttgttagatatctcttgatcgagccttcaatattgcctttaatatgctttttttctt 5210
Query: 645 ttgtttcttctaagaaatatgtatttgatcttcttcataa-taaaggtttcgaatgtctt 703
||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 5211 ttgtttcttctaagagatatgtatttgatcttcttcataattaagggtttcgaatgtctt 5270
Query: 704 ttttatactgaaactttaagtt-acagcaacttgttttacttc-acaacgttttaagaaa 761
||| |||||||||| || |||| ||||||||||| |||||||| |||||||| |||||||
Sbjct: 5271 tttcatactgaaacatttagttcacagcaacttggtttacttcaacaacgttataagaaa 5330
Query: 762 aa 763
||
Sbjct: 5331 aa 5332
>3x_Contig38
Length = 925
Score = 898 bits (453), Expect = 0.0
Identities = 488/500 (97%), Gaps = 11/500 (2%)
Strand = Plus / Plus
Query: 46 gcttgctaccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtac 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 gcttgctaccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtac 153
Query: 106 atgatcgaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 atgatcgaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttc 213
Query: 166 aactacatcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaat 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aactacatcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaat 273
Query: 226 tttatgtttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcata 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tttatgtttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcata 333
Query: 286 tattagccgttgtttcttatagttatcgattcctatcgggtcaggactccttgacctctt 345
|||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 334 tattagccgttgtttcttatagttatcg----------ggtcaggactccttgacctctt 383
Query: 346 catcttgaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 catcttgaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattc 443
Query: 406 taagcagatgatctgttcgctgctacttttgtaagtgttgtttcgtttgtcctaatttat 465
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 444 taagcagatgatctgttcgctgctacttttgtaggtgttgtttcgtttgtcctaatttat 503
Query: 466 cttatggccaaccgagaactttctggaagc-taaaatgaagatcattagaaatgtttgta 524
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 504 cttatggccaaccgagaactttctggaagcttaaaatgaagatcattagaaatgtttgta 563
Query: 525 aattcacccgttaagaaagt 544
||||||||||||||||||||
Sbjct: 564 aattcacccgttaagaaagt 583
Score = 216 bits (109), Expect = 6e-56
Identities = 160/173 (92%), Gaps = 3/173 (1%)
Strand = Plus / Plus
Query: 589 tgttagatatctcttgatcgagccttcaatattgcccttaatatgctttttttcttttgt 648
||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 618 tgttagatatctcttgaacgagccttcaatattgcctttaatatgcttttcttcttttgt 677
Query: 649 ttcttctaagaaatatgtatttgatcttcttcataa-taaaggtttcgaatgtctttttt 707
||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 678 ttcttctaagagatatgtatttgatcttcttcataattaagggtttcgaatgtctttttc 737
Query: 708 atactgaaactttaagtt-acagcaacttgttttacttc-acaacgttttaag 758
|||||||||| || |||| ||||||||||| |||||||| |||||||| ||||
Sbjct: 738 atactgaaacatttagttcacagcaacttggtttacttcaacaacgttataag 790
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9687
Number of Sequences: 1807
Number of extensions: 9687
Number of successful extensions: 100
Number of sequences better than 1.0e-20: 2
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)