BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZF02RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1604 1409 0.0
>3x_Contig1604
Length = 15703
Score = 1409 bits (711), Expect = 0.0
Identities = 817/850 (96%), Gaps = 3/850 (0%)
Strand = Plus / Plus
Query: 48 aggttaaggatgtgaatgaggatgatctatatgatacccactggctgcttggatctgtgg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11132 aggttaaggatgtgaatgaggatgatctatatgatacccactggctgcttggatctgtgg 11191
Query: 108 aacatggagaattgttatcttcagacactccatctattcctaaggaatggagtgacaaaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11192 aacatggagaattgttatcttcagacactccatctattcctaaggaatggagtgacaaaa 11251
Query: 168 ttagtgaaatcttgcaaacaaaatcctcatcatatcaagatatgtcaaatacctggacac 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11252 ttagtgaaatcttgcaaacaaaatcctcatcatatcaagatatgtcaaatacctggacac 11311
Query: 228 ttgaattaaagtcatgtccacacatacagactttcgacttatcgaacttggagaagcgag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11312 ttgaattaaagtcatgtccacacatacagactttcgacttatcgaacttggagaagcgag 11371
Query: 288 aaggtggcatttctcaaagctgtaacgactgtggtcttacttctaacctttggttatgtc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11372 aaggtggcatttctcaaagctgtaacgactgtggtcttacttctaacctttggttatgtc 11431
Query: 348 tccattgtggaaacgtcgcctgtggaagagagcaggttgggatagaggggtactctcatg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11432 tccattgtggaaacgtcgcctgtggaagagagcaggttgggatagaggggtactctcatg 11491
Query: 408 ctttgaaacattatgaaagcacagatggccacgctttatcgataaaattgggctctttga 467
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 11492 ctttgaaacattatgaaagcacagatggccacgctttagcgataaaattgggctctttga 11551
Query: 468 cagctgatgcagctgatatatactgttattcttgtgatgaagatgtgaaattcacccata 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11552 cagctgatgcagctgatatatactgttattcttgtgatgaagatgtgaaattcacccata 11611
Query: 528 atctgcagttgcaggatatcttgaagttttgggaagtcgaagtaccagccaagtccatag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 11612 atctgcagttgcaggatatcttgaagttttgggaagtcgaagtaccagccaagtccaaag 11671
Query: 588 aaaagacattggtggaattgcaagtggaacaaagtctgaaatgggattttcatatggtag 647
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 11672 aaaagacattggtggaattgcaagtggaacaaagtctgaaatgggattttcaaatggtag 11731
Query: 648 attcacaaggtaaaagtttanaacatctaccaaatggtcctgaatacngtttgggcttat 707
|||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct: 11732 attcacaaggtaaaagtttaaaacatctacaaaatggtcctgaatacggtttgggcttat 11791
Query: 708 taaatttgngcaattnctgctacctaaattctgttttggcagttttacttaacggtggga 767
|||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 11792 taaatttgggcaattcttgctacctaaattctgtattgcaagttttacttaacggtggga 11851
Query: 768 tcaggaattggaaacctanatggattaagatccctttctacggatgtccgtctatccagg 827
|||| |||||| |||||| |||||||| ||||| || |||| ||||| |||||||||| |
Sbjct: 11852 tcagaaattgg-aacctagatggattaggatcctttcctacagatgt-cgtctatccaag 11909
Query: 828 aacaattttacactggtcactaatccaaatacgaaatgctatgacctttacaccattcca 887
||| | ||||||||| ||||||| |||| |||||||||||||| ||||| || ||||
Sbjct: 11910 aacgaatttacactgtcaactaatcaaaatcagaaatgctatgacc-ttacagcaatcca 11968
Query: 888 gatttcctga 897
||| ||||||
Sbjct: 11969 gatatcctga 11978
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5677
Number of Sequences: 1807
Number of extensions: 5677
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)